pET-11a

Bacterial expression vector with a BamHI cloning site. For alternative reading frames, use pET-11b or pET-11c.

Sequence Author: MilliporeSigma (Novagen)

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HomePlasmidspET & Duet Vectors (Novagen)pET-11a
EcoRI (5675) AatII (5604) ZraI (5602) SspI (5486) ScaI (5162) PvuI (5052) PstI (4927) BsaI (4743) AhdI (4682) AlwNI (4205) PciI (3789) BspQI - SapI (3673) BstZ17I (3560) AccI (3559) BsaAI (3541) PflFI - Tth111I (3534) Bpu10I (2895) FspAI (2770) BspDI - ClaI (24) HindIII (29) BlpI (267) BamHI (319) T7 tag NheI (352) BmtI (356) NdeI (359) RBS XbaI (397) lac operator T7 promoter BglII (463) SgrAI (504) SphI (660) EcoNI (720) MluI (1185) BclI * (1199) BstEII (1366) PspOMI (1392) ApaI (1396) BssHII (1596) HpaI (1691) PshAI (2030) EagI (2253) NruI (2288) BfuAI - BspMI (2368) BsmI (2673) AvaI - BsoBI (2739) MscI * (2760) pET-11a 5677 bp
EcoRI  (5675)
1 site		 G A A T T C C T T A A G
AatII  (5604)
1 site		 G A C G T C C T G C A G
ZraI  (5602)
1 site		 G A C G T C C T G C A G
SspI  (5486)
1 site		 A A T A T T T T A T A A
ScaI  (5162)
1 site		 A G T A C T T C A T G A
PvuI  (5052)
1 site		 C G A T C G G C T A G C
PstI  (4927)
1 site		 C T G C A G G A C G T C
BsaI  (4743)
1 site		 G G T C T C N C C A G A G N ( N ) 4
Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (4682)
1 site		 G A C N N N N N G T C C T G N N N N N C A G
The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (4205)
1 site		 C A G N N N C T G G T C N N N G A C
Sticky ends from different AlwNI sites may not be compatible.
PciI  (3789)
1 site		 A C A T G T T G T A C A
PciI is inhibited by nonionic detergents.
BspQI  (3673)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different BspQI sites may not be compatible.
SapI  (3673)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
BstZ17I  (3560)
1 site		 G T A T A C C A T A T G
AccI  (3559)
1 site		 G T M K A C C A K M T G
Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
BsaAI  (3541)
1 site		 Y A C G T R R T G C A Y
PflFI  (3534)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (3534)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
Bpu10I  (2895)
1 site		 C C T N A G C G G A N T C G
Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
FspAI  (2770)
1 site		 R T G C G C A Y Y A C G C G T R
BspDI  (24)
1 site		 A T C G A T T A G C T A
ClaI  (24)
1 site		 A T C G A T T A G C T A
HindIII  (29)
1 site		 A A G C T T T T C G A A
BlpI  (267)
1 site		 G C T N A G C C G A N T C G
Sticky ends from different BlpI sites may not be compatible.
BamHI  (319)
1 site		 G G A T C C C C T A G G
After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
NheI  (352)
1 site		 G C T A G C C G A T C G
BmtI  (356)
1 site		 G C T A G C C G A T C G
NdeI  (359)
1 site		 C A T A T G G T A T A C
Prolonged incubation with NdeI may lead to removal of additional nucleotides.
XbaI  (397)
1 site		 T C T A G A A G A T C T
BglII  (463)
1 site		 A G A T C T T C T A G A
SgrAI  (504)
1 site		 C R C C G G Y G G Y G G C C R C
Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
SphI  (660)
1 site		 G C A T G C C G T A C G
EcoNI  (720)
1 site		 C C T N N N N N A G G G G A N N N N N T C C
The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
MluI  (1185)
1 site		 A C G C G T T G C G C A
BclI  (1199)
1 site		 T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
BstEII  (1366)
1 site		 G G T N A C C C C A N T G G
Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
PspOMI  (1392)
1 site		 G G G C C C C C C G G G
ApaI  (1396)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
BssHII  (1596)
1 site		 G C G C G C C G C G C G
BssHII is typically used at 50°C, but is 75% active at 37°C.
HpaI  (1691)
1 site		 G T T A A C C A A T T G
PshAI  (2030)
1 site		 G A C N N N N G T C C T G N N N N C A G
PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
EagI  (2253)
1 site		 C G G C C G G C C G G C
NruI  (2288)
1 site		 T C G C G A A G C G C T
BfuAI  (2368)
1 site		 A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4
Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (2368)
1 site		 A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4
Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
BsmI  (2673)
1 site		 G A A T G C N C T T A C G N
Sticky ends from different BsmI sites may not be compatible.
AvaI  (2739)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different AvaI sites may not be compatible.
BsoBI  (2739)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
MscI  (2760)
1 site		 T G G C C A A C C G G T
* Blocked by Dcm methylation.
lacI
835 .. 1917  =  1083 bp
360 amino acids  =  38.6 kDa
Product: lac repressor
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lacI
835 .. 1917  =  1083 bp
360 amino acids  =  38.6 kDa
Product: lac repressor
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
AmpR
4609 .. 5469  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 2:  
   4609 .. 5400  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4609 .. 5469  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 1:  signal sequence  
   5401 .. 5469  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4609 .. 5469  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
3850 .. 4438  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
3850 .. 4438  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
rop
3229 .. 3420  =  192 bp
63 amino acids  =  7.2 kDa
Product: Rop protein
rop
3229 .. 3420  =  192 bp
63 amino acids  =  7.2 kDa
Product: Rop protein
AmpR promoter
5470 .. 5574  =  105 bp
AmpR promoter
5470 .. 5574  =  105 bp
lacI promoter
757 .. 834  =  78 bp
lacI promoter
757 .. 834  =  78 bp
T7 terminator
213 .. 260  =  48 bp
transcription terminator for bacteriophage T7 RNA polymerase
T7 terminator
213 .. 260  =  48 bp
transcription terminator for bacteriophage T7 RNA polymerase
T7 tag
328 .. 360  =  33 bp
11 amino acids  =  1.1 kDa
Product: epitope tag from a T7 major capsid protein
T7 tag
328 .. 360  =  33 bp
11 amino acids  =  1.1 kDa
Product: epitope tag from a T7 major capsid protein
lac operator
405 .. 429  =  25 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lac operator
405 .. 429  =  25 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
T7 promoter
430 .. 448  =  19 bp
promoter for bacteriophage T7 RNA polymerase
T7 promoter
430 .. 448  =  19 bp
promoter for bacteriophage T7 RNA polymerase
RBS
369 .. 374  =  6 bp
ribosome binding site
RBS
369 .. 374  =  6 bp
ribosome binding site
ORF:  361 .. 588  =  228 bp
ORF:  75 amino acids  =  7.9 kDa
ORF:  958 .. 1917  =  960 bp
ORF:  319 amino acids  =  34.1 kDa
ORF:  2494 .. 2832  =  339 bp
ORF:  112 amino acids  =  12.6 kDa
ORF:  3196 .. 3420  =  225 bp
ORF:  74 amino acids  =  8.5 kDa
ORF:  1973 .. 2590  =  618 bp
ORF:  205 amino acids  =  21.8 kDa
ORF:  4739 .. 5005  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  585 .. 1085  =  501 bp
ORF:  166 amino acids  =  17.5 kDa
ORF:  1674 .. 1937  =  264 bp
ORF:  87 amino acids  =  8.9 kDa
ORF:  533 .. 796  =  264 bp
ORF:  87 amino acids  =  9.5 kDa
ORF:  1700 .. 2395  =  696 bp
ORF:  231 amino acids  =  25.4 kDa
ORF:  4609 .. 5469  =  861 bp
ORF:  286 amino acids  =  31.5 kDa
ORF:  420 .. 659  =  240 bp
ORF:  79 amino acids  =  8.0 kDa
ORF:  2829 .. 3197  =  369 bp
ORF:  122 amino acids  =  14.2 kDa
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Individual Sequences & Maps

pACYCDuet-1
pET-24a(+)
pET-3a
pET-51b(+) Ek_LIC (linearized)
pCDF-1b
pET-24b(+)
pET-3b
pET-52b(+)
pCDF-2 Ek_LIC
pET-24c(+)
pET-3c
pET-52b(+) 3C_LIC
pCDF-2 Ek_LIC (linearized)
pET-24d(+)
pET-3d
pET-52b(+) 3C_LIC (linearized)
pCDFDuet-1
pET-25b(+)
pET-40b(+)
pET-53-DEST
pCOLA-2-DEST
pET-26b(+)
pET-41 Ek_LIC
pET-54-DEST
pCOLA-3-DEST
pET-27b(+)
pET-41 Ek_LIC (linearized)
pET-55-DEST
pCOLADuet-1
pET-28a(+)
pET-41a(+)
pET-56-DEST
pET-11a
pET-28b(+)
pET-41b(+)
pET-57-DEST
pET-11b
pET-28c(+)
pET-41c(+)
pET-58-DEST
pET-11c
pET-29a(+)
pET-42a(+)
pET-59-DEST
pET-11d
pET-29b(+)
pET-42b(+)
pET-60-DEST
pET-14b
pET-29c(+)
pET-42c(+)
pET-61-DEST
pET-15b
pET-30 Ek_LIC
pET-43.1 Ek_LIC
pET-62-DEST
pET-16b
pET-30 Ek_LIC (linearized)
pET-43.1 Ek_LIC (linearized)
pET-9a
pET-17b
pET-30 Xa_LIC
pET-43.1a(+)
pET-9b
pET-19b
pET-30 Xa_LIC (linearized)
pET-43.1b(+)
pET-9c
pET-20b(+)
pET-30a(+)
pET-43.1c(+)
pET-9d
pET-21(+)
pET-30b(+)
pET-44a(+)
pETBlue-1
pET-21a(+)
pET-30c(+)
pET-44b(+)
pETBlue-2
pET-21b(+)
pET-31b(+)
pET-44c(+)
pETcoco-1
pET-21c(+)
pET-32 Ek_LIC
pET-45b(+)
pETcoco-2
pET-21d(+)
pET-32 Ek_LIC (linearized)
pET-46 Ek_LIC
pETDuet-1
pET-22b(+)
pET-32 Xa_LIC
pET-46 Ek_LIC (linearized)
pLacI
pET-23(+)
pET-32 Xa_LIC (linearized)
pET-47b(+)
pLysE
pET-23a(+)
pET-32a(+)
pET-48b(+)
pLysS
pET-23b(+)
pET-32b(+)
pET-49b(+)
pRSF-1b
pET-23c(+)
pET-32c(+)
pET-50b(+)
pRSF-2 Ek_LIC
pET-23d(+)
pET-33b(+)
pET-51b(+)
pRSF-2 Ek_LIC (linearized)
pET-24(+)
pET-39b(+)
pET-51b(+) Ek_LIC
pRSFDuet-1

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