pRSGC2-U6-sg-HTS6-UbiC-Cas9-2A-Puro

|Download SnapGene Viewer
No matches
AmpR promoter SspI (10,966) PciI (9269) SfiI (8847) AanI (8618) AanI (8562) KpnI (8227) Acc65I (8223) HincII (7628) SalI (7626) SexAI * (7587) BstEII (7154) RsrII (7136) BsiWI (7076) PflFI - Tth111I (7062) BamHI (6954) NotI (6946) FseI (6925) nucleoplasmin NLS BsaBI * (6291) MluI (1) NruI * (612) MfeI (964) BbvCI (1199) AleI (1352) BspDI - ClaI (1798) BbsI - BpiI (2064) BbsI - BpiI (2090) PaeR7I - PspXI - XhoI (2113) EcoRI (2280) AgeI (2289) BstBI (2298) AfeI (2358) SV40 NLS SV40 NLS SV40 NLS PspOMI (4148) ApaI (4152) EcoRV (4646) PmlI (5582) pRSGC2-U6-sg-HTS6-UbiC-Cas9-2A-Puro 11,553 bp
SspI  (10,966)
1 site
A A T A T T T T A T A A
PciI  (9269)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
SfiI  (8847)
1 site
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
AanI  (8618)
2 sites
T T A T A A A A T A T T
AanI  (8562)
2 sites
T T A T A A A A T A T T
KpnI  (8227)
1 site
G G T A C C C C A T G G
Acc65I  (8223)
1 site
G G T A C C C C A T G G
HincII  (7628)
1 site
G T Y R A C C A R Y T G
SalI  (7626)
1 site
G T C G A C C A G C T G
SexAI  (7587)
1 site
A C C W G G T T G G W C C A
* Blocked by Dcm methylation.
Sticky ends from different SexAI sites may not be compatible.
BstEII  (7154)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
RsrII  (7136)
1 site
C G G W C C G G C C W G G C

Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
BsiWI  (7076)
1 site
C G T A C G G C A T G C

BsiWI is typically used at 55°C, but is 50% active at 37°C.
PflFI  (7062)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (7062)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
BamHI  (6954)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
NotI  (6946)
1 site
G C G G C C G C C G C C G G C G
FseI  (6925)
1 site
G G C C G G C C C C G G C C G G

FseI gradually loses activity when stored at -20°C.
BsaBI  (6291)
1 site
G A T N N N N A T C C T A N N N N T A G
* Blocked by Dam methylation.
MluI  (1)
1 site
A C G C G T T G C G C A
NruI  (612)
1 site
T C G C G A A G C G C T
* Blocked by Dam methylation.
MfeI  (964)
1 site
C A A T T G G T T A A C
BbvCI  (1199)
1 site
C C T C A G C G G A G T C G
AleI  (1352)
1 site
C A C N N N N G T G G T G N N N N C A C
BspDI  (1798)
1 site
A T C G A T T A G C T A
ClaI  (1798)
1 site
A T C G A T T A G C T A
BbsI  (2064)
2 sites
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
BpiI  (2064)
2 sites
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BpiI sites may not be compatible.
BbsI  (2090)
2 sites
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
BpiI  (2090)
2 sites
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BpiI sites may not be compatible.
PaeR7I  (2113)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (2113)
1 site
V C T C G A G B B G A G C T C V
XhoI  (2113)
1 site
C T C G A G G A G C T C
EcoRI  (2280)
1 site
G A A T T C C T T A A G
AgeI  (2289)
1 site
A C C G G T T G G C C A
BstBI  (2298)
1 site
T T C G A A A A G C T T
AfeI  (2358)
1 site
A G C G C T T C G C G A
PspOMI  (4148)
1 site
G G G C C C C C C G G G
ApaI  (4152)
1 site
G G G C C C C C C G G G

ApaI can be used between 25°C and 37°C.
EcoRV  (4646)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
PmlI  (5582)
1 site
C A C G T G G T G C A C
SV40 NLS
2721 .. 2741  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
SV40 NLS
2721 .. 2741  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
SV40 NLS
2745 .. 2765  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
SV40 NLS
2745 .. 2765  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
SV40 NLS
2769 .. 2789  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
SV40 NLS
2769 .. 2789  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
Cas9
2796 .. 6896  =  4101 bp
1367 amino acids  =  158.3 kDa
Product: Cas9 (Csn1) endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system
generates RNA-guided double strand breaks in DNA
Cas9
2796 .. 6896  =  4101 bp
1367 amino acids  =  158.3 kDa
Product: Cas9 (Csn1) endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system
generates RNA-guided double strand breaks in DNA
nucleoplasmin NLS
6897 .. 6944  =  48 bp
16 amino acids  =  1.7 kDa
Product: bipartite nuclear localization signal from nucleoplasmin
nucleoplasmin NLS
6897 .. 6944  =  48 bp
16 amino acids  =  1.7 kDa
Product: bipartite nuclear localization signal from nucleoplasmin
T2A
6960 .. 7013  =  54 bp
18 amino acids  =  1.8 kDa
Product: 2A peptide from Thosea asigna virus capsid protein
Eukaryotic ribosomes fail to insert a peptide bond between the Gly and Pro residues, yielding separate polypeptides.
T2A
6960 .. 7013  =  54 bp
18 amino acids  =  1.8 kDa
Product: 2A peptide from Thosea asigna virus capsid protein
Eukaryotic ribosomes fail to insert a peptide bond between the Gly and Pro residues, yielding separate polypeptides.
PuroR
7020 .. 7619  =  600 bp
199 amino acids  =  21.5 kDa
Product: puromycin N-acetyltransferase
confers resistance to puromycin
PuroR
7020 .. 7619  =  600 bp
199 amino acids  =  21.5 kDa
Product: puromycin N-acetyltransferase
confers resistance to puromycin
AmpR
10,089 .. 10,949  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   10,089 .. 10,880  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
10,089 .. 10,949  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   10,881 .. 10,949  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
10,089 .. 10,949  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
9330 .. 9918  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
9330 .. 9918  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
WPRE
7632 .. 8220  =  589 bp
woodchuck hepatitis virus posttranscriptional regulatory element
WPRE
7632 .. 8220  =  589 bp
woodchuck hepatitis virus posttranscriptional regulatory element
UbiC promoter
2303 .. 2702  =  400 bp
human ubiquitin C promoter
UbiC promoter
2303 .. 2702  =  400 bp
human ubiquitin C promoter
U6 promoter
1819 .. 2067  =  249 bp
RNA polymerase III promoter for human U6 snRNA (Domitrovich & Kunkel, 2003)
U6 promoter
1819 .. 2067  =  249 bp
RNA polymerase III promoter for human U6 snRNA (Domitrovich & Kunkel, 2003)
3' LTR (ΔU3)
8294 .. 8527  =  234 bp
self-inactivating 3' long terminal repeat (LTR) from HIV-1
3' LTR (ΔU3)
8294 .. 8527  =  234 bp
self-inactivating 3' long terminal repeat (LTR) from HIV-1
RRE
1078 .. 1311  =  234 bp
The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm.
RRE
1078 .. 1311  =  234 bp
The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm.
RSV promoter
6 .. 232  =  227 bp
Rous sarcoma virus enhancer/promoter
RSV promoter
6 .. 232  =  227 bp
Rous sarcoma virus enhancer/promoter
5' LTR (truncated)
233 .. 413  =  181 bp
truncated 5' long terminal repeat (LTR) from HIV-1
5' LTR (truncated)
233 .. 413  =  181 bp
truncated 5' long terminal repeat (LTR) from HIV-1
SV40 ori
8760 .. 8895  =  136 bp
SV40 origin of replication
SV40 ori
8760 .. 8895  =  136 bp
SV40 origin of replication
HIV-1 Ψ
460 .. 585  =  126 bp
packaging signal of human immunodeficiency virus type 1
HIV-1 Ψ
460 .. 585  =  126 bp
packaging signal of human immunodeficiency virus type 1
SV40 poly(A) signal
8599 .. 8720  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
8599 .. 8720  =  122 bp
SV40 polyadenylation signal
cPPT/CTS
2122 .. 2237  =  116 bp
central polypurine tract and central termination sequence of HIV-1 (lacking the first T)
cPPT/CTS
2122 .. 2237  =  116 bp
central polypurine tract and central termination sequence of HIV-1 (lacking the first T)
AmpR promoter
10,950 .. 11,054  =  105 bp
AmpR promoter
10,950 .. 11,054  =  105 bp
cloning site
2065 .. 2094  =  30 bp
sgRNA cloning site
cloning site
2065 .. 2094  =  30 bp
sgRNA cloning site
ORF:  7735 .. 8325  =  591 bp
ORF:  196 amino acids  =  20.9 kDa
ORF:  10,219 .. 10,485  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  11,335 .. 180  =  399 bp
ORF:  132 amino acids  =  15.1 kDa
ORF:  956 .. 1837  =  882 bp
ORF:  293 amino acids  =  33.8 kDa
ORF:  8621 .. 8857  =  237 bp
ORF:  78 amino acids  =  8.6 kDa
ORF:  2715 .. 7619  =  4905 bp
ORF:  1634 amino acids  =  187.0 kDa
ORF:  7722 .. 8267  =  546 bp
ORF:  181 amino acids  =  19.7 kDa
ORF:  871 .. 1251  =  381 bp
ORF:  126 amino acids  =  13.3 kDa
ORF:  11,295 .. 161  =  420 bp
ORF:  139 amino acids  =  15.8 kDa
ORF:  2703 .. 5312  =  2610 bp
ORF:  869 amino acids  =  91.7 kDa
ORF:  10,089 .. 10,949  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  2501 .. 2920  =  420 bp
ORF:  139 amino acids  =  15.7 kDa
ORF:  4142 .. 4435  =  294 bp
ORF:  97 amino acids  =  10.8 kDa
ORF:  4706 .. 5155  =  450 bp
ORF:  149 amino acids  =  17.3 kDa
Click here to try SnapGene

Download pRSGC2-U6-sg-HTS6-UbiC-Cas9-2A-Puro.dna file

SnapGene

SnapGene is the easiest way to plan, visualize and document your everyday molecular biology procedures

  • Fast accurate construct design for all major molecular cloning techniques
  • Validate sequenced constructs using powerful alignment tools
  • Customize plasmid maps with flexible annotation and visualization controls
  • Automatically generate a rich graphical history of every edit and procedure

SnapGene Viewer

SnapGene Viewer is free software that allows molecular biologists to create, browse, and share richly annotated sequence files.

  • Gain unparalleled visibility of your plasmids, DNA and protein sequences
  • Annotate features on your plasmids using the curated feature database
  • Store, search, and share your sequences, files and maps

Individual Sequences & Maps

The maps, notes, and annotations in the zip file on this page are copyrighted material. This material may be used without restriction by academic, nonprofit, and governmental entities, except that the source must be cited as ’’www.snapgene.com/resources’’. Commercial entities must contact GSL Biotech LLC for permission and terms of use.

Discover the most user-friendly molecular biology experience.