pEZSeq-Kan (linearized)

Linearized and dephosphorylated blue/white screening vector with a kanamycin resistance marker for high efficiency blunt end cloning.

Sequence Author: Lucigen

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HomePlasmidsLucigen VectorspEZSeq-Kan (linearized)
BanI (1897) T3Te terminatorAcuI (1704) AlwNI (1572) BsiHKAI (1474) ApaLI (1470) PspFI (1464) BseYI (1460) BciVI (1359) BssSI - BssSαI (1329) ApaI (1162) EcoO109I - PspOMI (1158) PflMI (1036) TaqII (1027) AseI (972) BsmBI - Esp3I (789) BpmI (1903) Z-Rev (1952 .. 1975) BsrBI (1953) lac operator<HincII> (2008) <HincII> (0) EcoRI (4) EaeI (12) BmrI (46) Z-For (30 .. 53) PvuII (96) FspI (146) BglI (156) DraI - SwaI (179) tonB terminatorBsaAI (248) MslI (271) AvaI - BsoBI - PaeR7I - PspXI - XhoI (371) NruI (430) TsoI (614) PasI (645) EcoNI (685) SspI (698) BsrFI (727) AsiSI (773) pEZSeq™-Kan 2008 bp
BanI  (1897)
1 site		 G G Y R C C C C R Y G G
Sticky ends from different BanI sites may not be compatible.
AcuI  (1704)
1 site		 C T G A A G ( N ) 14 N N G A C T T C ( N ) 14
Cleavage may be enhanced when more than one copy of the AcuI recognition sequence is present.
Sticky ends from different AcuI sites may not be compatible.
After cleavage, AcuI can remain bound to DNA and alter its electrophoretic mobility.
For full activity, add fresh S-adenosylmethionine (SAM).
AlwNI  (1572)
1 site		 C A G N N N C T G G T C N N N G A C
Sticky ends from different AlwNI sites may not be compatible.
BsiHKAI  (1474)
1 site		 G W G C W C C W C G W G
Sticky ends from different BsiHKAI sites may not be compatible.
ApaLI  (1470)
1 site		 G T G C A C C A C G T G
PspFI  (1464)
1 site		 C C C A G C G G G T C G
BseYI  (1460)
1 site		 C C C A G C G G G T C G
After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
BciVI  (1359)
1 site		 G T A T C C ( N ) 5 N C A T A G G ( N ) 5
The 1-base overhangs produced by BciVI may be hard to ligate.
Sticky ends from different BciVI sites may not be compatible.
BssSI  (1329)
1 site		 C A C G A G G T G C T C
BssSαI  (1329)
1 site		 C A C G A G G T G C T C
ApaI  (1162)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
EcoO109I  (1158)
1 site		 R G G N C C Y Y C C N G G R
Sticky ends from different EcoO109I sites may not be compatible.
PspOMI  (1158)
1 site		 G G G C C C C C C G G G
PflMI  (1036)
1 site		 C C A N N N N N T G G G G T N N N N N A C C
Sticky ends from different PflMI sites may not be compatible.
TaqII  (1027)
1 site		 G A C C G A ( N ) 9 N N C T G G C T ( N ) 9
Sticky ends from different TaqII sites may not be compatible.
AseI  (972)
1 site		 A T T A A T T A A T T A
BsmBI  (789)
1 site		 C G T C T C N G C A G A G N ( N ) 4
Sticky ends from different BsmBI sites may not be compatible.
BsmBI-v2 is an improved version of BsmBI.
Esp3I  (789)
1 site		 C G T C T C N G C A G A G N ( N ) 4
Sticky ends from different Esp3I sites may not be compatible.
BpmI  (1903)
1 site		 C T G G A G ( N ) 14 N N G A C C T C ( N ) 14
Efficient cleavage requires at least two copies of the BpmI recognition sequence.
Sticky ends from different BpmI sites may not be compatible.
After cleavage, BpmI can remain bound to DNA and alter its electrophoretic mobility.
BpmI quickly loses activity at 37°C.
BsrBI  (1953)
1 site		 C C G C T C G G C G A G
This recognition sequence is asymmetric, so ligating blunt ends generated by BsrBI will not always regenerate a BsrBI site.
BsrBI is typically used at 37°C, but can be used at temperatures up to 50°C.
End  (2008)
0 sites
Start  (0)
0 sites
EcoRI  (4)
1 site		 G A A T T C C T T A A G
EaeI  (12)
1 site		 Y G G C C R R C C G G Y
BmrI  (46)
1 site		 A C T G G G ( N ) 4 N T G A C C C ( N ) 4
The 1-base overhangs produced by BmrI may be hard to ligate.
Sticky ends from different BmrI sites may not be compatible.
Unlike most restriction enzymes, BmrI can cleave DNA in the absence of magnesium.
PvuII  (96)
1 site		 C A G C T G G T C G A C
FspI  (146)
1 site		 T G C G C A A C G C G T
BglI  (156)
1 site		 G C C N N N N N G G C C G G N N N N N C C G
Sticky ends from different BglI sites may not be compatible.
DraI  (179)
1 site		 T T T A A A A A A T T T
SwaI  (179)
1 site		 A T T T A A A T T A A A T T T A
SwaI is typically used at 25°C, but is 50% active at 37°C.
BsaAI  (248)
1 site		 Y A C G T R R T G C A Y
MslI  (271)
1 site		 C A Y N N N N R T G G T R N N N N Y A C
AvaI  (371)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different AvaI sites may not be compatible.
BsoBI  (371)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
PaeR7I  (371)
1 site		 C T C G A G G A G C T C
PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (371)
1 site		 V C T C G A G B B G A G C T C V
XhoI  (371)
1 site		 C T C G A G G A G C T C
NruI  (430)
1 site		 T C G C G A A G C G C T
TsoI  (614)
1 site		 T A R C C A ( N ) 9 N N A T Y G G T ( N ) 9
Sticky ends from different TsoI sites may not be compatible.
After cleavage, TsoI can remain bound to DNA and alter its electrophoretic mobility.
For full activity, add fresh S-adenosylmethionine (SAM).
PasI  (645)
1 site		 C C C W G G G G G G W C C C
Sticky ends from different PasI sites may not be compatible.
EcoNI  (685)
1 site		 C C T N N N N N A G G G G A N N N N N T C C
The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
SspI  (698)
1 site		 A A T A T T T T A T A A
BsrFI  (727)
1 site		 R C C G G Y Y G G C C R
Cleavage may be enhanced when more than one copy of the BsrFI recognition sequence is present.
After cleavage, BsrFI can remain bound to DNA and alter its electrophoretic mobility.
AsiSI  (773)
1 site		 G C G A T C G C C G C T A G C G
Z-Rev
24-mer  /  42% GC
1 binding site
1952 .. 1975  =  24 annealed bases
Tm  =  58°C
Z-For
24-mer  /  63% GC
1 binding site
30 .. 53  =  24 annealed bases
Tm  =  65°C
KanR
342 .. 1157  =  816 bp
271 amino acids  =  30.9 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin
KanR
342 .. 1157  =  816 bp
271 amino acids  =  30.9 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin
ori
1217 .. 1804  =  588 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
1217 .. 1804  =  588 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
lacZα
1 .. 172  =  172 bp
56 amino acids  =  6.5 kDa
Product: LacZα fragment of β-galactosidase
lacZα
1 .. 172  =  172 bp
56 amino acids  =  6.5 kDa
Product: LacZα fragment of β-galactosidase
cat promoter
239 .. 341  =  103 bp
promoter of the E. coli cat gene
cat promoter
239 .. 341  =  103 bp
promoter of the E. coli cat gene
tonB terminator
207 .. 238  =  32 bp
bidirectional E. coli tonB-P14 transcription terminator
tonB terminator
207 .. 238  =  32 bp
bidirectional E. coli tonB-P14 transcription terminator
lac promoter
1909 .. 1939  =  31 bp
3 segments
   Segment 1:  -35  
   1909 .. 1914  =  6 bp
promoter for the E. coli lac operon
lac promoter
1909 .. 1939  =  31 bp
3 segments
   Segment 2:  
   1915 .. 1932  =  18 bp
promoter for the E. coli lac operon
lac promoter
1909 .. 1939  =  31 bp
3 segments
   Segment 3:  -10  
   1933 .. 1939  =  7 bp
promoter for the E. coli lac operon
lac promoter
1909 .. 1939  =  31 bp
3 segments
promoter for the E. coli lac operon
T3Te terminator
1826 .. 1855  =  30 bp
phage T3 early transcription terminator
T3Te terminator
1826 .. 1855  =  30 bp
phage T3 early transcription terminator
T7Te terminator
1178 .. 1205  =  28 bp
phage T7 early transcription terminator
T7Te terminator
1178 .. 1205  =  28 bp
phage T7 early transcription terminator
lacZα
1983 .. 2008  =  26 bp
8 amino acids  =  893.1 Da
Product: LacZα fragment of β-galactosidase
lacZα
1983 .. 2008  =  26 bp
8 amino acids  =  893.1 Da
Product: LacZα fragment of β-galactosidase
lac operator
1947 .. 1963  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lac operator
1947 .. 1963  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
ORF:  1144 .. 1542  =  399 bp
ORF:  132 amino acids  =  14.8 kDa
ORF:  342 .. 1157  =  816 bp
ORF:  271 amino acids  =  30.9 kDa
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Download pEZSeq-Kan (linearized).dna file

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Individual Sequences & Maps

pAviTag C-His Kan
pEZ BAC
pRANGER-BTB-2
pSMART GC HK (linearized)
pAviTag N-His Kan
pEZ BAC (BamHI linearized)
pRANGER-BTB-3
pSMART GC LK (linearized)
pAviTag-C N-His SUMO Kan
pEZ BAC (HpaI linearized)
pRANGER-BTB-5
pSMART HCAmp
pAviTag-N N-His SUMO Kan
pGC Blue (linearized)
pRham C-His Kan
pSMART HCAmp (linearized)
pETite C-His Kan
pInvRecA
pRham N-His Kan
pSMART HCKan
pETite N-His Kan
pJAZZ-OC
pRham N-His SUMO Kan
pSMART HCKan (linearized)
pETite N-His SUMO Kan
pJAZZ-OK
pSMART BAC v2.0
pSMART LCAmp
pEZSeq-Amp
pJW168
pSMART BAC v2.0 (BamHI linearized)
pSMART LCAmp (linearized)
pEZSeq-Amp (linearized)
pME-HA (linearized)
pSMART BAC v2.0 (EcoRI linearized)
pSMART LCKan
pEZSeq-Kan
pNGS FOS (linearized)
pSMART BAC v2.0 (HindIII linearized)
pSMART LCKan (linearized)
pEZSeq-Kan (linearized)
pRANGER-BTB-1
pSMART FOS v2.0 (linearized)

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