pEU-HSBC

Flexi® Vector with the sacB gene, for in vitro transcription and translation of an N-terminally 6xHis-tagged protein.

Sequence Author: Center for Eukaryotic Structural Genomics

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HomePlasmidsStructural Genomics VectorspEU-HSBC
PfoI (6062) AatII (5951) ZraI (5949) XmnI (5628) FspI (5251) BsaI (5090) AhdI (5029) AlwNI (4552) BspQI - SapI (4020) ApaI (3712) PspOMI (3708) BstBI (3682) BssHII (3620) BsiWI (3563) PmlI (3556) NsiI (3517) PshAI (3209) SpeI (3179) AfeI (24) SgrAI (106) NgoMIV (115) NaeI (117) SP6 promoter ATG AsiSI - SgfI (549) BstZ17I (661) StuI * (1031) BsgI (1355) PsiI (1430) EcoRV (2233) BspEI (2590) PasI - PflMI * (2826) PmeI (3045) Eco53kI (3058) SacI (3060) AvaI - BmeT110I - BsoBI - TspMI - XmaI (3066) SmaI (3068) XbaI (3077) SalI (3083) PstI - SbfI (3093) BlpI (3158) pEU-HSBC 6336 bp
PfoI  (6062)
1 site		 T C C N G G A A G G N C C T
Sticky ends from different PfoI sites may not be compatible.
AatII  (5951)
1 site		 G A C G T C C T G C A G
ZraI  (5949)
1 site		 G A C G T C C T G C A G
XmnI  (5628)
1 site		 G A A N N N N T T C C T T N N N N A A G
FspI  (5251)
1 site		 T G C G C A A C G C G T
BsaI  (5090)
1 site		 G G T C T C N C C A G A G N ( N ) 4
Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (5029)
1 site		 G A C N N N N N G T C C T G N N N N N C A G
The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (4552)
1 site		 C A G N N N C T G G T C N N N G A C
Sticky ends from different AlwNI sites may not be compatible.
BspQI  (4020)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different BspQI sites may not be compatible.
SapI  (4020)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
ApaI  (3712)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
PspOMI  (3708)
1 site		 G G G C C C C C C G G G
BstBI  (3682)
1 site		 T T C G A A A A G C T T
BssHII  (3620)
1 site		 G C G C G C C G C G C G
BssHII is typically used at 50°C, but is 75% active at 37°C.
BsiWI  (3563)
1 site		 C G T A C G G C A T G C
BsiWI is typically used at 55°C, but is 50% active at 37°C.
PmlI  (3556)
1 site		 C A C G T G G T G C A C
NsiI  (3517)
1 site		 A T G C A T T A C G T A
PshAI  (3209)
1 site		 G A C N N N N G T C C T G N N N N C A G
PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
SpeI  (3179)
1 site		 A C T A G T T G A T C A
AfeI  (24)
1 site		 A G C G C T T C G C G A
SgrAI  (106)
1 site		 C R C C G G Y G G Y G G C C R C
Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
NgoMIV  (115)
1 site		 G C C G G C C G G C C G
Efficient cleavage requires at least two copies of the NgoMIV recognition sequence.
NaeI  (117)
1 site		 G C C G G C C G G C C G
Efficient cleavage requires at least two copies of the NaeI recognition sequence.
AsiSI  (549)
1 site		 G C G A T C G C C G C T A G C G
SgfI  (549)
1 site		 G C G A T C G C C G C T A G C G
BstZ17I  (661)
1 site		 G T A T A C C A T A T G
StuI  (1031)
1 site		 A G G C C T T C C G G A
* Blocked by Dcm methylation.
BsgI  (1355)
1 site		 G T G C A G ( N ) 14 N N C A C G T C ( N ) 14
Efficient cleavage requires at least two copies of the BsgI recognition sequence.
Sticky ends from different BsgI sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
PsiI  (1430)
1 site		 T T A T A A A A T A T T
EcoRV  (2233)
1 site		 G A T A T C C T A T A G
EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
BspEI  (2590)
1 site		 T C C G G A A G G C C T
PasI  (2826)
1 site		 C C C W G G G G G G W C C C
Sticky ends from different PasI sites may not be compatible.
PflMI  (2826)
1 site		 C C A N N N N N T G G G G T N N N N N A C C
* Blocked by Dcm methylation.
Sticky ends from different PflMI sites may not be compatible.
PmeI  (3045)
1 site		 G T T T A A A C C A A A T T T G
Eco53kI  (3058)
1 site		 G A G C T C C T C G A G
SacI  (3060)
1 site		 G A G C T C C T C G A G
AvaI  (3066)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different AvaI sites may not be compatible.
BmeT110I  (3066)
1 site		 C Y C G R G G R G C Y C
BsoBI  (3066)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
TspMI  (3066)
1 site		 C C C G G G G G G C C C
XmaI  (3066)
1 site		 C C C G G G G G G C C C
Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (3068)
1 site		 C C C G G G G G G C C C
SmaI can be used at 37°C for brief incubations.
XbaI  (3077)
1 site		 T C T A G A A G A T C T
SalI  (3083)
1 site		 G T C G A C C A G C T G
PstI  (3093)
1 site		 C T G C A G G A C G T C
SbfI  (3093)
1 site		 C C T G C A G G G G A C G T C C
BlpI  (3158)
1 site		 G C T N A G C C G A N T C G
Sticky ends from different BlpI sites may not be compatible.
SacB
790 .. 2211  =  1422 bp
473 amino acids  =  53.0 kDa
2 segments
   Segment 1:  signal peptide  
   790 .. 876  =  87 bp
   29 amino acids  =  3.0 kDa
Product: secreted levansucrase that renders bacterial growth sensitive to sucrose
negative selection marker
SacB
790 .. 2211  =  1422 bp
473 amino acids  =  53.0 kDa
2 segments
   Segment 2:  
   877 .. 2211  =  1335 bp
   444 amino acids  =  50.0 kDa
Product: secreted levansucrase that renders bacterial growth sensitive to sucrose
negative selection marker
SacB
790 .. 2211  =  1422 bp
473 amino acids  =  53.0 kDa
2 segments
Product: secreted levansucrase that renders bacterial growth sensitive to sucrose
negative selection marker
AmpR
4956 .. 5816  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   4956 .. 5747  =  792 bp
   263 amino acids  =  29.0 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4956 .. 5816  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   5748 .. 5816  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4956 .. 5816  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
CmR
2381 .. 3040  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
CmR
2381 .. 3040  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
ori
4197 .. 4785  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
4197 .. 4785  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
AmpR promoter
5817 .. 5921  =  105 bp
AmpR promoter
5817 .. 5921  =  105 bp
lac UV5 promoter
2297 .. 2327  =  31 bp
3 segments
   Segment 1:  -35  
   2297 .. 2302  =  6 bp
E. coli lac promoter with an "up" mutation
lac UV5 promoter
2297 .. 2327  =  31 bp
3 segments
   Segment 2:  
   2303 .. 2320  =  18 bp
E. coli lac promoter with an "up" mutation
lac UV5 promoter
2297 .. 2327  =  31 bp
3 segments
   Segment 3:  -10  
   2321 .. 2327  =  7 bp
E. coli lac promoter with an "up" mutation
lac UV5 promoter
2297 .. 2327  =  31 bp
3 segments
E. coli lac promoter with an "up" mutation
ATG
521 .. 523  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
521 .. 523  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
6xHis
527 .. 544  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
527 .. 544  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
SP6 promoter
373 .. 391  =  19 bp
promoter for bacteriophage SP6 RNA polymerase
SP6 promoter
373 .. 391  =  19 bp
promoter for bacteriophage SP6 RNA polymerase
ORF:  790 .. 2211  =  1422 bp
ORF:  473 amino acids  =  53.0 kDa
ORF:  5086 .. 5352  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  6292 .. 267  =  312 bp
ORF:  103 amino acids  =  10.6 kDa
ORF:  2381 .. 3040  =  660 bp
ORF:  219 amino acids  =  25.7 kDa
ORF:  6172 .. 183  =  348 bp
ORF:  115 amino acids  =  11.9 kDa
ORF:  4956 .. 5816  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
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Individual Sequences & Maps

p11
pMCSG19B (linearized)
pMCSG41
pMCSG68 (linearized)
p15Tv-L
pMCSG19C
pMCSG41 (linearized)
pMCSG69
p283
pMCSG19C (linearized)
pMCSG42
pMCSG69 (linearized)
pBEN1-SGC
pMCSG20
pMCSG42 (linearized)
pMCSG7
pBEN1-SGC (linearized)
pMCSG20 (linearized)
pMCSG43
pMCSG7 (linearized)
pDB-HisGST
pMCSG21
pMCSG43 (linearized)
pMCSG70
pDB.GST
pMCSG21 (linearized)
pMCSG46
pMCSG70 (linearized)
pDB.His.MBP
pMCSG22
pMCSG46 (linearized)
pMCSG71
pDB.His.NusA
pMCSG22 (linearized)
pMCSG48
pMCSG71 (linearized)
pDB.His.TRX
pMCSG23
pMCSG48 (linearized)
pMCSG73
pDB.TRX
pMCSG23 (linearized)
pMCSG49
pMCSG73 (linearized)
pEU-GST-FV
pMCSG24
pMCSG49 (linearized)
pMCSG75
pEU-His-FV
pMCSG24 (linearized)
pMCSG50
pMCSG75 (linearized)
pEU-HSBC
pMCSG25
pMCSG50 (linearized)
pMCSG76
pFB-LIC-Bse
pMCSG25 (linearized)
pMCSG51
pMCSG76 (linearized)
pFB-LIC-Bse (linearized)
pMCSG26
pMCSG51 (linearized)
pMCSG77
pH3c-LIC
pMCSG26 (linearized)
pMCSG52
pMCSG77 (linearized)
pH3c-LIC (linearized)
pMCSG27
pMCSG52 (linearized)
pMCSG79
pHM3C-LIC
pMCSG27 (linearized)
pMCSG53
pMCSG79 (linearized)
pHM3C-LIC (linearized)
pMCSG28
pMCSG53 (linearized)
pMCSG8
pLIC-CH
pMCSG28 (linearized)
pMCSG54
pMCSG8 (linearized)
pLIC-CH (linearized)
pMCSG29
pMCSG54 (linearized)
pMCSG81
pLIC-EGFP
pMCSG29 (linearized)
pMCSG55
pMCSG81 (linearized)
pLIC-EGFP (linearized)
pMCSG30
pMCSG55 (linearized)
pMCSG9
pLIC-SGC1
pMCSG30 (linearized)
pMCSG56
pMCSG9 (linearized)
pLIC-SGC1 (linearized)
pMCSG31
pMCSG56 (linearized)
pNH-TrxT
pMCentr1
pMCSG31 (linearized)
pMCSG57
pNH-TrxT (linearized)
pMCentr1 (linearized)
pMCSG32
pMCSG57 (linearized)
pNIC-CH
pMCentr2
pMCSG32 (linearized)
pMCSG58
pNIC-CH (linearized)
pMCentr2 (linearized)
pMCSG33
pMCSG58 (linearized)
pNIC-CTHF
pMCentr3
pMCSG33 (linearized)
pMCSG59
pNIC-CTHF (linearized)
pMCentr3 (linearized)
pMCSG34
pMCSG59 (linearized)
pNIC-Zb
pMCSG10
pMCSG34 (linearized)
pMCSG60
pNIC-Zb (linearized)
pMCSG10 (linearized)
pMCSG34B
pMCSG60 (linearized)
pNIC28-Bsa4
pMCSG11
pMCSG34B (linearized)
pMCSG61
pNIC28-Bsa4 (linearized)
pMCSG11 (linearized)
pMCSG35
pMCSG61 (linearized)
pNYCOMPS-LIC-FH10T+ (N term) - linearized
pMCSG12
pMCSG35 (linearized)
pMCSG62
pNYCOMPS-LIC-FH10T+ (N term)
pMCSG12 (linearized)
pMCSG35B
pMCSG62 (linearized)
pSpeedET
pMCSG13
pMCSG35B (linearized)
pMCSG63
pVP13
pMCSG13 (linearized)
pMCSG37
pMCSG63 (linearized)
pVP16
pMCSG14
pMCSG37 (linearized)
pMCSG64
pVP33A
pMCSG14 (linearized)
pMCSG38
pMCSG64 (linearized)
pVP33K
pMCSG17
pMCSG38 (linearized)
pMCSG65
pVP56A
pMCSG17 (linearized)
pMCSG38C
pMCSG65 (linearized)
pVP56K
pMCSG18
pMCSG38C (linearized)
pMCSG66
pVP65K
pMCSG18 (linearized)
pMCSG39
pMCSG66 (linearized)
pVP68K
pMCSG19
pMCSG39 (linearized)
pMCSG67
pVP81K
pMCSG19 (linearized)
pMCSG40
pMCSG67 (linearized)
pVP91A
pMCSG19B
pMCSG40 (linearized)
pMCSG68

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