pHM3C-LIC (linearized)

Linearized bacterial vector for ligation-independent cloning (LIC), with an N-terminal 6xHis-MBP cassette followed by an HRV 3C protease cleavage site.

Sequence Author: Center for Structures of Membrane Proteins

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HomePlasmidsStructural Genomics VectorspHM3C-LIC (linearized)
SalI (34) EagI - NotI (24) thrombin site Start (0) End (6515) EcoRI (6477) SacI (6444) Eco53kI (6442) BmgBI (5876) BsiWI (5624) BsaI (5397) NcoI (5321) 6xHis ATG NdeI (5293) RBS XbaI (5253) T7 promoter SgrAI (5146) SphI (4998) MluI (4465) BstEII (4283) NmeAIII (4265) ApaI (4262) PspOMI (4258) EcoRV (4019) AvaI - BsoBI - PaeR7I - PspXI - XhoI (61) DraIII (468) AsiSI (1168) NruI (1509) BssSI - BssSαI (2191) PciI (2364) BspQI - SapI (2481) TatI (2560) BstZ17I (2597) PflFI - Tth111I (2622) PpuMI (3359) FspI - FspAI (3387) BglI (3408) PshAI (3624) pHM3C-LIC 6515 bp
SalI  (34)
1 site		 G T C G A C C A G C T G
EagI  (24)
1 site		 C G G C C G G C C G G C
NotI  (24)
1 site		 G C G G C C G C C G C C G G C G
Start  (0)
0 sites
End  (6515)
0 sites
EcoRI  (6477)
1 site		 G A A T T C C T T A A G
SacI  (6444)
1 site		 G A G C T C C T C G A G
Eco53kI  (6442)
1 site		 G A G C T C C T C G A G
BmgBI  (5876)
1 site		 C A C G T C G T G C A G
This recognition sequence is asymmetric, so ligating blunt ends generated by BmgBI will not always regenerate a BmgBI site.
BsiWI  (5624)
1 site		 C G T A C G G C A T G C
BsiWI is typically used at 55°C, but is 50% active at 37°C.
BsaI  (5397)
1 site		 G G T C T C N C C A G A G N ( N ) 4
Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
NcoI  (5321)
1 site		 C C A T G G G G T A C C
NdeI  (5293)
1 site		 C A T A T G G T A T A C
Prolonged incubation with NdeI may lead to removal of additional nucleotides.
XbaI  (5253)
1 site		 T C T A G A A G A T C T
SgrAI  (5146)
1 site		 C R C C G G Y G G Y G G C C R C
Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
SphI  (4998)
1 site		 G C A T G C C G T A C G
MluI  (4465)
1 site		 A C G C G T T G C G C A
BstEII  (4283)
1 site		 G G T N A C C C C A N T G G
Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
NmeAIII  (4265)
1 site		 G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19
Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
ApaI  (4262)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
PspOMI  (4258)
1 site		 G G G C C C C C C G G G
EcoRV  (4019)
1 site		 G A T A T C C T A T A G
EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
AvaI  (61)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different AvaI sites may not be compatible.
BsoBI  (61)
1 site		 C Y C G R G G R G C Y C
Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
PaeR7I  (61)
1 site		 C T C G A G G A G C T C
PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (61)
1 site		 V C T C G A G B B G A G C T C V
XhoI  (61)
1 site		 C T C G A G G A G C T C
DraIII  (468)
1 site		 C A C N N N G T G G T G N N N C A C
Sticky ends from different DraIII sites may not be compatible.
AsiSI  (1168)
1 site		 G C G A T C G C C G C T A G C G
NruI  (1509)
1 site		 T C G C G A A G C G C T
BssSI  (2191)
1 site		 C A C G A G G T G C T C
BssSαI  (2191)
1 site		 C A C G A G G T G C T C
PciI  (2364)
1 site		 A C A T G T T G T A C A
PciI is inhibited by nonionic detergents.
BspQI  (2481)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different BspQI sites may not be compatible.
SapI  (2481)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
TatI  (2560)
1 site		 W G T A C W W C A T G W
BstZ17I  (2597)
1 site		 G T A T A C C A T A T G
PflFI  (2622)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2622)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
PpuMI  (3359)
1 site		 R G G W C C Y Y C C W G G R
Sticky ends from different PpuMI sites may not be compatible.
FspI  (3387)
1 site		 T G C G C A A C G C G T
FspAI  (3387)
1 site		 R T G C G C A Y Y A C G C G T R
BglI  (3408)
1 site		 G C C N N N N N G G C C G G N N N N N C C G
Sticky ends from different BglI sites may not be compatible.
PshAI  (3624)
1 site		 G A C N N N N G T C C T G N N N N C A G
PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
ATG
5295 .. 5297  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
5295 .. 5297  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
6xHis
5307 .. 5324  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
5307 .. 5324  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
MBP
5334 .. 6434  =  1101 bp
367 amino acids  =  40.3 kDa
Product: maltose binding protein from E. coli
This version of the gene does not encode a signal sequence, so MBP will remain in the cytosol.
MBP
5334 .. 6434  =  1101 bp
367 amino acids  =  40.3 kDa
Product: maltose binding protein from E. coli
This version of the gene does not encode a signal sequence, so MBP will remain in the cytosol.
HRV 3C site
6501 .. 6524  =  24 bp
8 amino acids  =  902.1 Da
Product: recognition and cleavage site for human rhinovirus 3C and PreScission proteases
HRV 3C site
6501 .. 6524  =  24 bp
8 amino acids  =  902.1 Da
Product: recognition and cleavage site for human rhinovirus 3C and PreScission proteases
lacI
3738 .. 4820  =  1083 bp
360 amino acids  =  38.6 kDa
Product: lac repressor
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lacI
3738 .. 4820  =  1083 bp
360 amino acids  =  38.6 kDa
Product: lac repressor
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
KanR
783 .. 1598  =  816 bp
271 amino acids  =  31.1 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin in bacteria or G418 (Geneticin®) in eukaryotes
KanR
783 .. 1598  =  816 bp
271 amino acids  =  31.1 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin in bacteria or G418 (Geneticin®) in eukaryotes
ori
1720 .. 2308  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
1720 .. 2308  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
235 .. 690  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
235 .. 690  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
rop
2738 .. 2929  =  192 bp
63 amino acids  =  7.2 kDa
Product: Rop protein, which maintains plasmids at low copy number
rop
2738 .. 2929  =  192 bp
63 amino acids  =  7.2 kDa
Product: Rop protein, which maintains plasmids at low copy number
lacI promoter
4821 .. 4898  =  78 bp
lacI promoter
4821 .. 4898  =  78 bp
T7 terminator
151 .. 198  =  48 bp
transcription terminator for bacteriophage T7 RNA polymerase
T7 terminator
151 .. 198  =  48 bp
transcription terminator for bacteriophage T7 RNA polymerase
lac operator
5226 .. 5250  =  25 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lac operator
5226 .. 5250  =  25 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
T7 promoter
5207 .. 5225  =  19 bp
promoter for bacteriophage T7 RNA polymerase
T7 promoter
5207 .. 5225  =  19 bp
promoter for bacteriophage T7 RNA polymerase
thrombin site
4 .. 21  =  18 bp
6 amino acids  =  627.7 Da
Product: thrombin recognition and cleavage site
thrombin site
4 .. 21  =  18 bp
6 amino acids  =  627.7 Da
Product: thrombin recognition and cleavage site
6xHis
67 .. 84  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
67 .. 84  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
RBS
5281 .. 5286  =  6 bp
ribosome binding site
RBS
5281 .. 5286  =  6 bp
ribosome binding site
ORF:  4996 .. 5235  =  240 bp
ORF:  79 amino acids  =  8.0 kDa
ORF:  3704 .. 3955  =  252 bp
ORF:  83 amino acids  =  9.1 kDa
ORF:  4859 .. 5122  =  264 bp
ORF:  87 amino acids  =  9.5 kDa
ORF:  2961 .. 3329  =  369 bp
ORF:  122 amino acids  =  14.2 kDa
ORF:  5295 .. 6533  =  1239 bp
ORF:  413 amino acids  =  45.2 kDa
ORF:  783 .. 1598  =  816 bp
ORF:  271 amino acids  =  31.1 kDa
ORF:  3738 .. 4697  =  960 bp
ORF:  319 amino acids  =  34.1 kDa
ORF:  5067 .. 5453  =  387 bp
ORF:  128 amino acids  =  14.2 kDa
ORF:  5673 .. 6533  =  861 bp
ORF:  286 amino acids  =  33.0 kDa  (no start codon)
ORF:  2738 .. 2962  =  225 bp
ORF:  74 amino acids  =  8.5 kDa
ORF:  3326 .. 3682  =  357 bp
ORF:  118 amino acids  =  13.0 kDa
ORF:  3718 .. 3981  =  264 bp
ORF:  87 amino acids  =  8.9 kDa
ORF:  4570 .. 5070  =  501 bp
ORF:  166 amino acids  =  17.5 kDa
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Individual Sequences & Maps

p11
pMCSG19B (linearized)
pMCSG41
pMCSG68 (linearized)
p15Tv-L
pMCSG19C
pMCSG41 (linearized)
pMCSG69
p283
pMCSG19C (linearized)
pMCSG42
pMCSG69 (linearized)
pBEN1-SGC
pMCSG20
pMCSG42 (linearized)
pMCSG7
pBEN1-SGC (linearized)
pMCSG20 (linearized)
pMCSG43
pMCSG7 (linearized)
pDB-HisGST
pMCSG21
pMCSG43 (linearized)
pMCSG70
pDB.GST
pMCSG21 (linearized)
pMCSG46
pMCSG70 (linearized)
pDB.His.MBP
pMCSG22
pMCSG46 (linearized)
pMCSG71
pDB.His.NusA
pMCSG22 (linearized)
pMCSG48
pMCSG71 (linearized)
pDB.His.TRX
pMCSG23
pMCSG48 (linearized)
pMCSG73
pDB.TRX
pMCSG23 (linearized)
pMCSG49
pMCSG73 (linearized)
pEU-GST-FV
pMCSG24
pMCSG49 (linearized)
pMCSG75
pEU-His-FV
pMCSG24 (linearized)
pMCSG50
pMCSG75 (linearized)
pEU-HSBC
pMCSG25
pMCSG50 (linearized)
pMCSG76
pFB-LIC-Bse
pMCSG25 (linearized)
pMCSG51
pMCSG76 (linearized)
pFB-LIC-Bse (linearized)
pMCSG26
pMCSG51 (linearized)
pMCSG77
pH3c-LIC
pMCSG26 (linearized)
pMCSG52
pMCSG77 (linearized)
pH3c-LIC (linearized)
pMCSG27
pMCSG52 (linearized)
pMCSG79
pHM3C-LIC
pMCSG27 (linearized)
pMCSG53
pMCSG79 (linearized)
pHM3C-LIC (linearized)
pMCSG28
pMCSG53 (linearized)
pMCSG8
pLIC-CH
pMCSG28 (linearized)
pMCSG54
pMCSG8 (linearized)
pLIC-CH (linearized)
pMCSG29
pMCSG54 (linearized)
pMCSG81
pLIC-EGFP
pMCSG29 (linearized)
pMCSG55
pMCSG81 (linearized)
pLIC-EGFP (linearized)
pMCSG30
pMCSG55 (linearized)
pMCSG9
pLIC-SGC1
pMCSG30 (linearized)
pMCSG56
pMCSG9 (linearized)
pLIC-SGC1 (linearized)
pMCSG31
pMCSG56 (linearized)
pNH-TrxT
pMCentr1
pMCSG31 (linearized)
pMCSG57
pNH-TrxT (linearized)
pMCentr1 (linearized)
pMCSG32
pMCSG57 (linearized)
pNIC-CH
pMCentr2
pMCSG32 (linearized)
pMCSG58
pNIC-CH (linearized)
pMCentr2 (linearized)
pMCSG33
pMCSG58 (linearized)
pNIC-CTHF
pMCentr3
pMCSG33 (linearized)
pMCSG59
pNIC-CTHF (linearized)
pMCentr3 (linearized)
pMCSG34
pMCSG59 (linearized)
pNIC-Zb
pMCSG10
pMCSG34 (linearized)
pMCSG60
pNIC-Zb (linearized)
pMCSG10 (linearized)
pMCSG34B
pMCSG60 (linearized)
pNIC28-Bsa4
pMCSG11
pMCSG34B (linearized)
pMCSG61
pNIC28-Bsa4 (linearized)
pMCSG11 (linearized)
pMCSG35
pMCSG61 (linearized)
pNYCOMPS-LIC-FH10T+ (N term) - linearized
pMCSG12
pMCSG35 (linearized)
pMCSG62
pNYCOMPS-LIC-FH10T+ (N term)
pMCSG12 (linearized)
pMCSG35B
pMCSG62 (linearized)
pSpeedET
pMCSG13
pMCSG35B (linearized)
pMCSG63
pVP13
pMCSG13 (linearized)
pMCSG37
pMCSG63 (linearized)
pVP16
pMCSG14
pMCSG37 (linearized)
pMCSG64
pVP33A
pMCSG14 (linearized)
pMCSG38
pMCSG64 (linearized)
pVP33K
pMCSG17
pMCSG38 (linearized)
pMCSG65
pVP56A
pMCSG17 (linearized)
pMCSG38C
pMCSG65 (linearized)
pVP56K
pMCSG18
pMCSG38C (linearized)
pMCSG66
pVP65K
pMCSG18 (linearized)
pMCSG39
pMCSG66 (linearized)
pVP68K
pMCSG19
pMCSG39 (linearized)
pMCSG67
pVP81K
pMCSG19 (linearized)
pMCSG40
pMCSG67 (linearized)
pVP91A
pMCSG19B
pMCSG40 (linearized)
pMCSG68

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