pQE-30 UA (linearized)

Linearized bacterial expression and 6xHis-tagging vector with 3'-U overhangs for UA cloning of a PCR product.

Sequence Author: Qiagen

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HomePlasmidsTA and GC Cloning VectorspQE-30 UA (linearized)
BbsI (3316) EcoO109I (3314) AatII (3260) ZraI (3258) XmnI (2937) PvuI (2708) FspI (2560) AseI (2510) NmeAIII (2486) BglI (2458) BsrFI (2418) BsaI (2399) AhdI (2338) AlwNI (1861) PspFI (1753) BseYI (1749) PaeR7I - XhoI (3331) T5 promoter PsiI (3379) MfeI (3389) lac operator EcoRI (3418) ATG 6xHis BamHI (3475) PmlI (3483) EcoRV (3488) End (3504) Start (1) BglII (15) Eco53kI (23) BanII - SacI (25) Acc65I (27) KpnI - TspMI - XmaI (31) SmaI (33) SalI (36) HincII (38) StuI (44) PstI (52) HindIII (56) BlpI (68) NheI (176) BmtI (180) Bpu10I (201) PvuII (328) BspEI (424) PasI - PflMI * (660) MscI (695) BtgI - NcoI - StyI (729) XbaI (1032) PfoI (1089) PflFI - Tth111I (1192) BstZ17I (1218) NdeI (1268) BstAPI (1269) BspQI - SapI (1329) AflIII - PciI (1445) pQE-30 UA 3503 bp
BbsI  (3316)
1 site		 G A A G A C N N C T T C T G N N ( N ) 4
Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
EcoO109I  (3314)
1 site		 R G G N C C Y Y C C N G G R
Sticky ends from different EcoO109I sites may not be compatible.
AatII  (3260)
1 site		 G A C G T C C T G C A G
ZraI  (3258)
1 site		 G A C G T C C T G C A G
XmnI  (2937)
1 site		 G A A N N N N T T C C T T N N N N A A G
PvuI  (2708)
1 site		 C G A T C G G C T A G C
FspI  (2560)
1 site		 T G C G C A A C G C G T
AseI  (2510)
1 site		 A T T A A T T A A T T A
NmeAIII  (2486)
1 site		 G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19
Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
BglI  (2458)
1 site		 G C C N N N N N G G C C G G N N N N N C C G
Sticky ends from different BglI sites may not be compatible.
BsrFI  (2418)
1 site		 R C C G G Y Y G G C C R
Cleavage may be enhanced when more than one copy of the BsrFI recognition sequence is present.
After cleavage, BsrFI can remain bound to DNA and alter its electrophoretic mobility.
BsaI  (2399)
1 site		 G G T C T C N C C A G A G N ( N ) 4
Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (2338)
1 site		 G A C N N N N N G T C C T G N N N N N C A G
The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (1861)
1 site		 C A G N N N C T G G T C N N N G A C
Sticky ends from different AlwNI sites may not be compatible.
PspFI  (1753)
1 site		 C C C A G C G G G T C G
BseYI  (1749)
1 site		 C C C A G C G G G T C G
After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
PaeR7I  (3331)
1 site		 C T C G A G G A G C T C
PaeR7I does not recognize the sequence CTCTCGAG.
XhoI  (3331)
1 site		 C T C G A G G A G C T C
PsiI  (3379)
1 site		 T T A T A A A A T A T T
MfeI  (3389)
1 site		 C A A T T G G T T A A C
EcoRI  (3418)
1 site		 G A A T T C C T T A A G
BamHI  (3475)
1 site		 G G A T C C C C T A G G
After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
PmlI  (3483)
1 site		 C A C G T G G T G C A C
EcoRV  (3488)
1 site		 G A T A T C C T A T A G
EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
End  (3504)
0 sites
Start  (1)
0 sites
BglII  (15)
1 site		 A G A T C T T C T A G A
Eco53kI  (23)
1 site		 G A G C T C C T C G A G
BanII  (25)
1 site		 G R G C Y C C Y C G R G
Sticky ends from different BanII sites may not be compatible.
SacI  (25)
1 site		 G A G C T C C T C G A G
Acc65I  (27)
1 site		 G G T A C C C C A T G G
KpnI  (31)
1 site		 G G T A C C C C A T G G
TspMI  (31)
1 site		 C C C G G G G G G C C C
XmaI  (31)
1 site		 C C C G G G G G G C C C
Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (33)
1 site		 C C C G G G G G G C C C
SmaI can be used at 37°C for brief incubations.
SalI  (36)
1 site		 G T C G A C C A G C T G
HincII  (38)
1 site		 G T Y R A C C A R Y T G
StuI  (44)
1 site		 A G G C C T T C C G G A
PstI  (52)
1 site		 C T G C A G G A C G T C
HindIII  (56)
1 site		 A A G C T T T T C G A A
BlpI  (68)
1 site		 G C T N A G C C G A N T C G
Sticky ends from different BlpI sites may not be compatible.
NheI  (176)
1 site		 G C T A G C C G A T C G
BmtI  (180)
1 site		 G C T A G C C G A T C G
Bpu10I  (201)
1 site		 C C T N A G C G G A N T C G
Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
PvuII  (328)
1 site		 C A G C T G G T C G A C
BspEI  (424)
1 site		 T C C G G A A G G C C T
PasI  (660)
1 site		 C C C W G G G G G G W C C C
Sticky ends from different PasI sites may not be compatible.
PflMI  (660)
1 site		 C C A N N N N N T G G G G T N N N N N A C C
* Blocked by Dcm methylation.
Sticky ends from different PflMI sites may not be compatible.
MscI  (695)
1 site		 T G G C C A A C C G G T
BtgI  (729)
1 site		 C C R Y G G G G Y R C C
Sticky ends from different BtgI sites may not be compatible.
NcoI  (729)
1 site		 C C A T G G G G T A C C
StyI  (729)
1 site		 C C W W G G G G W W C C
Sticky ends from different StyI sites may not be compatible.
XbaI  (1032)
1 site		 T C T A G A A G A T C T
PfoI  (1089)
1 site		 T C C N G G A A G G N C C T
Sticky ends from different PfoI sites may not be compatible.
PflFI  (1192)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (1192)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
BstZ17I  (1218)
1 site		 G T A T A C C A T A T G
NdeI  (1268)
1 site		 C A T A T G G T A T A C
Prolonged incubation with NdeI may lead to removal of additional nucleotides.
BstAPI  (1269)
1 site		 G C A N N N N N T G C C G T N N N N N A C G
Sticky ends from different BstAPI sites may not be compatible.
BspQI  (1329)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different BspQI sites may not be compatible.
SapI  (1329)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
AflIII  (1445)
1 site		 A C R Y G T T G Y R C A
Sticky ends from different AflIII sites may not be compatible.
PciI  (1445)
1 site		 A C A T G T T G T A C A
PciI is inhibited by nonionic detergents.
AmpR
2265 .. 3125  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   2265 .. 3056  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
2265 .. 3125  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   3057 .. 3125  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
2265 .. 3125  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
CmR
215 .. 874  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
CmR
215 .. 874  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
ori
1506 .. 2094  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
1506 .. 2094  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
AmpR promoter
3126 .. 3230  =  105 bp
AmpR promoter
3126 .. 3230  =  105 bp
lambda t0 terminator
77 .. 171  =  95 bp
transcription terminator from phage lambda
lambda t0 terminator
77 .. 171  =  95 bp
transcription terminator from phage lambda
rrnB T1 terminator
939 .. 1025  =  87 bp
transcription terminator T1 from the E. coli rrnB gene
rrnB T1 terminator
939 .. 1025  =  87 bp
transcription terminator T1 from the E. coli rrnB gene
MCS
2 .. 61  =  60 bp
multiple cloning site
MCS
2 .. 61  =  60 bp
multiple cloning site
T5 promoter
3340 .. 3384  =  45 bp
4 segments
   Segment 1:  
   3340 .. 3354  =  15 bp
bacteriophage T5 promoter for E. coli RNA polymerase, with embedded lac operator
T5 promoter
3340 .. 3384  =  45 bp
4 segments
   Segment 2:  -35  
   3355 .. 3360  =  6 bp
bacteriophage T5 promoter for E. coli RNA polymerase, with embedded lac operator
T5 promoter
3340 .. 3384  =  45 bp
4 segments
   Segment 3:  
   3361 .. 3377  =  17 bp
bacteriophage T5 promoter for E. coli RNA polymerase, with embedded lac operator
T5 promoter
3340 .. 3384  =  45 bp
4 segments
   Segment 4:  -10  
   3378 .. 3384  =  7 bp
bacteriophage T5 promoter for E. coli RNA polymerase, with embedded lac operator
T5 promoter
3340 .. 3384  =  45 bp
4 segments
bacteriophage T5 promoter for E. coli RNA polymerase, with embedded lac operator
ATG
3445 .. 3447  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
3445 .. 3447  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
6xHis
3457 .. 3474  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
3457 .. 3474  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
MCS
3475 .. 3503  =  29 bp
multiple cloning site
MCS
3475 .. 3503  =  29 bp
multiple cloning site
lac operator
3392 .. 3408  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lac operator
3392 .. 3408  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
RBS
3431 .. 3436  =  6 bp
ribosome binding site
RBS
3431 .. 3436  =  6 bp
ribosome binding site
lac operator
3360 .. 3376  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lac operator
3360 .. 3376  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
stop codons
61 .. 71  =  11 bp
stop codons in all three reading frames
stop codons
61 .. 71  =  11 bp
stop codons in all three reading frames
ORF:  2395 .. 2661  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  215 .. 874  =  660 bp
ORF:  219 amino acids  =  25.7 kDa
ORF:  2265 .. 3125  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
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Individual Sequences & Maps

Allele TA Vector (linearized)
pCR2.1-TOPO (linearized)
pJAZZ-OK GC (left arm)
pSpark TA
pBAD-TOPO (linearized)
pCR4-TOPO (linearized)
pJAZZ-OK GC (right arm)
pSpark TA Done
pBAD Thio-TOPO (linearized)
pCR8 GW TOPO (linearized)
pLenti6.3 V5-TOPO (linearized)
pSTBlue-1 AccepTor
pBlue-TOPO (linearized)
pCRII-TOPO (linearized)
pLenti7.3 V5-TOPO (linearized)
pT7Blue T-Vector
pcDNA3.1 CT-GFP-TOPO (linearized)
pDrive (linearized)
pLPS-T (linearized)
pTA Plus (linearized)
pcDNA3.1 NT-GFP-TOPO (linearized)
pEF6 V5-His-TOPO (linearized)
pLUG (linearized)
pTargeT (linearized)
pcDNA3.1 V5-His-TOPO (linearized)
pENTR5'-TOPO (linearized)
pLUG-Multi (linearized)
pTOP TA V2 (linearized)
pcDNA3.3-TOPO (linearized)
pET SUMO (linearized)
pMT V5-His-TOPO (linearized)
pTrcHis-TOPO (linearized)
pcDNA3.4-TOPO (linearized)
pETBlue-1 AccepTor
pOptiVEC-TOPO (linearized)
pTrcHis2-TOPO (linearized)
pcDNA4 HisMax-TOPO (linearized)
pEXP5-CT TOPO (linearized)
pPrime (linearized)
pTZ57R_T
pcDNA5 FRT TO-TOPO (linearized)
pEXP5-NT TOPO (linearized)
pQE-30 UA (linearized)
pUC57-T
pcDNA5 FRT V5-His-TOPO (linearized)
pGC Blue (linearized)
pSC-A-amp kan (linearized)
pYES2.1 V5-His-TOPO (linearized)
pcDNA6.2 C-EmGFP-GW TOPO (linearized)
pGEM-T (linearized)
pSecTag FRT V5-His-TOPO (linearized)
RBC T&A Cloning Vector (linearized)
pcDNA6.2 C-YFP-GW TOPO (linearized)
pGEM-T Easy (linearized)
pSMART GC HK (linearized)
T-Vector pMD19 (Simple)
pcDNA6.2 N-EmGFP-GW TOPO (linearized)
pGlow-TOPO (linearized)
pSMART GC LK (linearized)
T-Vector pMD20
pCR-XL-TOPO (linearized)
pIB V5-His-TOPO (linearized)

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