pX335

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BbsI (245) SV40 NLS BbsI (267) CMV enhancer chicken β-actin promoter ATG SV40 NLS pX335 8433 bp
BbsI  (245)
2 sites
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
BbsI  (267)
2 sites
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
ATG
1250 .. 1252  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
1250 .. 1252  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
HA
1253 .. 1279  =  27 bp
9 amino acids  =  1.1 kDa
Product: HA (human influenza hemagglutinin) epitope tag
HA
1253 .. 1279  =  27 bp
9 amino acids  =  1.1 kDa
Product: HA (human influenza hemagglutinin) epitope tag
SV40 NLS
1283 .. 1303  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
SV40 NLS
1283 .. 1303  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
Cas9(D10A)
1313 .. 5413  =  4101 bp
1367 amino acids  =  158.3 kDa
3 segments
   Segment 1:  
   1313 .. 1336  =  24 bp
   8 amino acids  =  923.1 Da
Product: nickase mutant of the Cas9 endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system
generates RNA-guided single strand nicks in DNA due to the D10A mutation in the RuvC catalytic domain
Cas9(D10A)
1313 .. 5413  =  4101 bp
1367 amino acids  =  158.3 kDa
3 segments
   Segment 2:  
   1337 .. 1339  =  3 bp
   1 amino acid  =  89.1 Da
Product: nickase mutant of the Cas9 endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system
generates RNA-guided single strand nicks in DNA due to the D10A mutation in the RuvC catalytic domain
Cas9(D10A)
1313 .. 5413  =  4101 bp
1367 amino acids  =  158.3 kDa
3 segments
   Segment 3:  
   1340 .. 5413  =  4074 bp
   1358 amino acids  =  157.3 kDa
Product: nickase mutant of the Cas9 endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system
generates RNA-guided single strand nicks in DNA due to the D10A mutation in the RuvC catalytic domain
Cas9(D10A)
1313 .. 5413  =  4101 bp
1367 amino acids  =  158.3 kDa
3 segments
Product: nickase mutant of the Cas9 endonuclease from the Streptococcus pyogenes Type II CRISPR/Cas system
generates RNA-guided single strand nicks in DNA due to the D10A mutation in the RuvC catalytic domain
SV40 NLS
5417 .. 5437  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
SV40 NLS
5417 .. 5437  =  21 bp
7 amino acids  =  883.1 Da
Product: nuclear localization signal of SV40 large T antigen
AmpR
6753 .. 7613  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   6753 .. 6821  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
6753 .. 7613  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   6822 .. 7613  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
6753 .. 7613  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
7784 .. 8372  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
7784 .. 8372  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
5911 .. 6366  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
5911 .. 6366  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
CMV enhancer
440 .. 725  =  286 bp
human cytomegalovirus immediate early enhancer; contains an 18-bp deletion relative to the standard CMV enhancer
CMV enhancer
440 .. 725  =  286 bp
human cytomegalovirus immediate early enhancer; contains an 18-bp deletion relative to the standard CMV enhancer
chicken β-actin promoter
727 .. 1004  =  278 bp
chicken β-actin promoter
727 .. 1004  =  278 bp
U6 promoter
1 .. 249  =  249 bp
RNA polymerase III promoter for human U6 snRNA (Domitrovich & Kunkel, 2003)
U6 promoter
1 .. 249  =  249 bp
RNA polymerase III promoter for human U6 snRNA (Domitrovich & Kunkel, 2003)
hybrid intron
1005 .. 1232  =  228 bp
hybrid between chicken β-actin (CBA) and minute virus of mice (MMV) introns (Gray et al., 2011)
hybrid intron
1005 .. 1232  =  228 bp
hybrid between chicken β-actin (CBA) and minute virus of mice (MMV) introns (Gray et al., 2011)
bGH poly(A) signal
5480 .. 5687  =  208 bp
bovine growth hormone polyadenylation signal
bGH poly(A) signal
5480 .. 5687  =  208 bp
bovine growth hormone polyadenylation signal
AAV2 ITR
5696 .. 5836  =  141 bp
inverted terminal repeat of adeno-associated virus serotype 2
AAV2 ITR
5696 .. 5836  =  141 bp
inverted terminal repeat of adeno-associated virus serotype 2
AmpR promoter
6648 .. 6752  =  105 bp
AmpR promoter
6648 .. 6752  =  105 bp
gRNA scaffold
268 .. 343  =  76 bp
guide RNA scaffold for the Streptococcus pyogenes CRISPR/Cas9 system
gRNA scaffold
268 .. 343  =  76 bp
guide RNA scaffold for the Streptococcus pyogenes CRISPR/Cas9 system
polIII terminator
344 .. 349  =  6 bp
RNA polymerase III transcription terminator
polIII terminator
344 .. 349  =  6 bp
RNA polymerase III transcription terminator
ORF:  5710 .. 5934  =  225 bp
ORF:  74 amino acids  =  8.3 kDa
ORF:  635 .. 982  =  348 bp
ORF:  115 amino acids  =  12.1 kDa
ORF:  1250 .. 5449  =  4200 bp
ORF:  1399 amino acids  =  162.0 kDa
ORF:  825 .. 1076  =  252 bp
ORF:  83 amino acids  =  8.7 kDa
ORF:  6753 .. 7613  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  2659 .. 2952  =  294 bp
ORF:  97 amino acids  =  10.8 kDa
ORF:  3223 .. 3672  =  450 bp
ORF:  149 amino acids  =  17.3 kDa
ORF:  5610 .. 5891  =  282 bp
ORF:  93 amino acids  =  10.4 kDa
ORF:  1229 .. 3829  =  2601 bp
ORF:  866 amino acids  =  91.2 kDa
ORF:  7217 .. 7483  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
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Download pX335.dna file

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