pcDNA3.1 Zeo(+)

Mammalian expression vector with the CMV promoter. The MCS is in the forward (+) orientation.

Sequence Author: Thermo Fisher (Invitrogen)

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HomePlasmidsI.M.A.G.E. Consortium PlasmidspcDNA3.1 Zeo(+)
SgrDI (5013) SspI (4896) ScaI (4572) PvuI (4462) FspI (4314) AhdI (4092) PciI (3199) BspQI - SapI (3083) BstZ17I (2820) BsmI (2768) BglII (12) MfeI (161) Bpu10I (180) NruI (208) MluI (228) NdeI (484) SnaBI (590) NheI (895) BmtI (899) AflII (908) HindIII (911) Acc65I (917) KpnI (921) BamHI (929) EcoRI (952) PstI (961) EcoRV (964) NotI (979) PaeR7I - PspXI - XhoI (985) XbaI (991) EcoO109I - PspOMI (997) ApaI (1001) BbsI (1217) StuI (2054) AvrII (2055) MscI (2187) BssHII - MauBI (2220) SgrAI (2298) BmgBI (2318) FseI (2460) pcDNA™3.1/Zeo(+) 5015 bp
SgrDI  (5013)
1 site		 C G T C G A C G G C A G C T G C
SspI  (4896)
1 site		 A A T A T T T T A T A A
ScaI  (4572)
1 site		 A G T A C T T C A T G A
PvuI  (4462)
1 site		 C G A T C G G C T A G C
FspI  (4314)
1 site		 T G C G C A A C G C G T
AhdI  (4092)
1 site		 G A C N N N N N G T C C T G N N N N N C A G
The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
PciI  (3199)
1 site		 A C A T G T T G T A C A
PciI is inhibited by nonionic detergents.
BspQI  (3083)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different BspQI sites may not be compatible.
SapI  (3083)
1 site		 G C T C T T C N C G A G A A G N N N N
Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
BstZ17I  (2820)
1 site		 G T A T A C C A T A T G
BsmI  (2768)
1 site		 G A A T G C N C T T A C G N
Sticky ends from different BsmI sites may not be compatible.
BglII  (12)
1 site		 A G A T C T T C T A G A
MfeI  (161)
1 site		 C A A T T G G T T A A C
Bpu10I  (180)
1 site		 C C T N A G C G G A N T C G
Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
NruI  (208)
1 site		 T C G C G A A G C G C T
MluI  (228)
1 site		 A C G C G T T G C G C A
NdeI  (484)
1 site		 C A T A T G G T A T A C
Prolonged incubation with NdeI may lead to removal of additional nucleotides.
SnaBI  (590)
1 site		 T A C G T A A T G C A T
NheI  (895)
1 site		 G C T A G C C G A T C G
BmtI  (899)
1 site		 G C T A G C C G A T C G
AflII  (908)
1 site		 C T T A A G G A A T T C
HindIII  (911)
1 site		 A A G C T T T T C G A A
Acc65I  (917)
1 site		 G G T A C C C C A T G G
KpnI  (921)
1 site		 G G T A C C C C A T G G
BamHI  (929)
1 site		 G G A T C C C C T A G G
After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
EcoRI  (952)
1 site		 G A A T T C C T T A A G
PstI  (961)
1 site		 C T G C A G G A C G T C
EcoRV  (964)
1 site		 G A T A T C C T A T A G
EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
NotI  (979)
1 site		 G C G G C C G C C G C C G G C G
PaeR7I  (985)
1 site		 C T C G A G G A G C T C
PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (985)
1 site		 V C T C G A G B B G A G C T C V
XhoI  (985)
1 site		 C T C G A G G A G C T C
XbaI  (991)
1 site		 T C T A G A A G A T C T
EcoO109I  (997)
1 site		 R G G N C C Y Y C C N G G R
Sticky ends from different EcoO109I sites may not be compatible.
PspOMI  (997)
1 site		 G G G C C C C C C G G G
ApaI  (1001)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
BbsI  (1217)
1 site		 G A A G A C N N C T T C T G N N ( N ) 4
Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
StuI  (2054)
1 site		 A G G C C T T C C G G A
AvrII  (2055)
1 site		 C C T A G G G G A T C C
MscI  (2187)
1 site		 T G G C C A A C C G G T
BssHII  (2220)
1 site		 G C G C G C C G C G C G
BssHII is typically used at 50°C, but is 75% active at 37°C.
MauBI  (2220)
1 site		 C G C G C G C G G C G C G C G C
SgrAI  (2298)
1 site		 C R C C G G Y G G Y G G C C R C
Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
BmgBI  (2318)
1 site		 C A C G T C G T G C A G
This recognition sequence is asymmetric, so ligating blunt ends generated by BmgBI will not always regenerate a BmgBI site.
FseI  (2460)
1 site		 G G C C G G C C C C G G C C G G
FseI gradually loses activity when stored at -20°C.
AmpR
4019 .. 4879  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   4019 .. 4810  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4019 .. 4879  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   4811 .. 4879  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4019 .. 4879  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
3260 .. 3848  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
3260 .. 3848  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
1298 .. 1726  =  429 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
1298 .. 1726  =  429 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
CMV enhancer
235 .. 614  =  380 bp
human cytomegalovirus immediate early enhancer
CMV enhancer
235 .. 614  =  380 bp
human cytomegalovirus immediate early enhancer
BleoR
2184 .. 2558  =  375 bp
124 amino acids  =  13.8 kDa
Product: antibiotic-binding protein
confers resistance to bleomycin, phleomycin, and Zeocin™
BleoR
2184 .. 2558  =  375 bp
124 amino acids  =  13.8 kDa
Product: antibiotic-binding protein
confers resistance to bleomycin, phleomycin, and Zeocin™
SV40 promoter
1740 .. 2070  =  331 bp
SV40 enhancer and early promoter
SV40 promoter
1740 .. 2070  =  331 bp
SV40 enhancer and early promoter
bGH poly(A) signal
1028 .. 1252  =  225 bp
bovine growth hormone polyadenylation signal
bGH poly(A) signal
1028 .. 1252  =  225 bp
bovine growth hormone polyadenylation signal
CMV promoter
615 .. 818  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
CMV promoter
615 .. 818  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
SV40 poly(A) signal
2688 .. 2809  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
2688 .. 2809  =  122 bp
SV40 polyadenylation signal
MCS
895 .. 1002  =  108 bp
multiple cloning site
MCS
895 .. 1002  =  108 bp
multiple cloning site
AmpR promoter
4880 .. 4984  =  105 bp
AmpR promoter
4880 .. 4984  =  105 bp
EM7 promoter
2118 .. 2165  =  48 bp
synthetic bacterial promoter
EM7 promoter
2118 .. 2165  =  48 bp
synthetic bacterial promoter
T7 promoter
863 .. 881  =  19 bp
promoter for bacteriophage T7 RNA polymerase
T7 promoter
863 .. 881  =  19 bp
promoter for bacteriophage T7 RNA polymerase
SV40 ori
1921 .. 2056  =  136 bp
SV40 origin of replication
SV40 ori
1921 .. 2056  =  136 bp
SV40 origin of replication
ORF:  1249 .. 1515  =  267 bp
ORF:  88 amino acids  =  9.3 kDa
ORF:  2184 .. 2558  =  375 bp
ORF:  124 amino acids  =  13.8 kDa
ORF:  4149 .. 4415  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  2177 .. 2464  =  288 bp
ORF:  95 amino acids  =  10.1 kDa
ORF:  4019 .. 4879  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
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Individual Sequences & Maps

Lafmid BA
pcDNAII
pCR2.1-TOPO (linearized)
pExpress-1
pAD-GAL4
pcDNA3.1(+)
pCR3.1
pME18S-FL3
pAMP1
pcDNA3.1(-)
pCR3.1 (linearized)
pOTB7
pAMP10
pcDNA3.1 Zeo(+)
pCR4-TOPO
pOTB7-3
pBK-CMV
pCMV SPORT
pCR4-TOPO (linearized)
pOTB7a
pBluescribe (modified)
pCMV SPORT2
pCS105
pPCR-Script Amp SK(+)
pBluescript II SK(+)
pCMV SPORT4
pCS107
pRKW2
pBluescript KS(+)
pCMV SPORT6
pCS108
pSPORT 1
pBluescript SK(+)
pCMV SPORT6.1
pCS2+
pSPORT 2
pBluescript SK(-)
pCMV SPORT6ccdB
pCS22+
pT7T3D-PacI
pBluescript-FL
pCR-Blunt II-TOPO
pCS2G
pUC19
pBluescript II KS(+)
pCR-Blunt II-TOPO (linearized)
pDNR-Dual
pYX-Asc
pBluescriptR
pCR-XL-TOPO
pDNR-LIB
pZErO-2
pcDNA3
pCR-XL-TOPO (linearized)
pDONR201
pZL1
pcDNAI
pCR2.1-TOPO
pDONR223

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