pGilda

Centromeric yeast two-hybrid vector for galactose-regulated expression of LexA fused to the N-terminus of a protein.

Sequence Author: Clontech (TaKaRa)

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HomePlasmidsYeast PlasmidspGilda
PspOMI (6552) PspFI (5849) BseYI (5845) AlwNI (5740) AhdI (5261) BsaI (5195) ScaI (4780) BsaHI (4721) PpuMI (4338) PmlI (4327) SwaI (4303) PfoI (3708) AfeI (3548) ApaI (6556) AgeI (293) BstAPI (545) HpaI (702) MluI (770) EcoRV (1057) SnaBI (1109) PmeI (1213) XcmI (1258) EcoRI (1298) TspMI - XmaI (1303) SmaI (1305) BamHI (1308) BtgI - NcoI - StyI (1319) EagI - NotI (1325) PaeR7I - PspXI - XhoI (1331) BfuAI - BspMI (1349) SphI (1554) Eco53kI (1684) SacI (1686) M13 fwd NgoMIV (2007) NaeI (2009) DraIII (2115) BssHII (2444) NsiI (2481) AleI (2697) NheI (2748) BmtI (2752) BsiWI (2840) BstXI (2871) MscI (3049) BsaBI * (3199) pGilda 6570 bp
PspOMI  (6552)
1 site		 G G G C C C C C C G G G
PspFI  (5849)
1 site		 C C C A G C G G G T C G
BseYI  (5845)
1 site		 C C C A G C G G G T C G
After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
AlwNI  (5740)
1 site		 C A G N N N C T G G T C N N N G A C
Sticky ends from different AlwNI sites may not be compatible.
AhdI  (5261)
1 site		 G A C N N N N N G T C C T G N N N N N C A G
The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
BsaI  (5195)
1 site		 G G T C T C N C C A G A G N ( N ) 4
Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
ScaI  (4780)
1 site		 A G T A C T T C A T G A
BsaHI  (4721)
1 site		 G R C G Y C C Y G C R G
BsaHI is typically used at 37°C, but is even more active at 60°C.
PpuMI  (4338)
1 site		 R G G W C C Y Y C C W G G R
Sticky ends from different PpuMI sites may not be compatible.
PmlI  (4327)
1 site		 C A C G T G G T G C A C
SwaI  (4303)
1 site		 A T T T A A A T T A A A T T T A
SwaI is typically used at 25°C, but is 50% active at 37°C.
PfoI  (3708)
1 site		 T C C N G G A A G G N C C T
Sticky ends from different PfoI sites may not be compatible.
AfeI  (3548)
1 site		 A G C G C T T C G C G A
ApaI  (6556)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
AgeI  (293)
1 site		 A C C G G T T G G C C A
BstAPI  (545)
1 site		 G C A N N N N N T G C C G T N N N N N A C G
Sticky ends from different BstAPI sites may not be compatible.
HpaI  (702)
1 site		 G T T A A C C A A T T G
MluI  (770)
1 site		 A C G C G T T G C G C A
EcoRV  (1057)
1 site		 G A T A T C C T A T A G
EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
SnaBI  (1109)
1 site		 T A C G T A A T G C A T
PmeI  (1213)
1 site		 G T T T A A A C C A A A T T T G
XcmI  (1258)
1 site		 C C A N N N N N N N N N T G G G G T N N N N N N N N N A C C
The 1-base overhangs produced by XcmI may be hard to ligate.
Sticky ends from different XcmI sites may not be compatible.
EcoRI  (1298)
1 site		 G A A T T C C T T A A G
TspMI  (1303)
1 site		 C C C G G G G G G C C C
XmaI  (1303)
1 site		 C C C G G G G G G C C C
Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (1305)
1 site		 C C C G G G G G G C C C
SmaI can be used at 37°C for brief incubations.
BamHI  (1308)
1 site		 G G A T C C C C T A G G
After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
BtgI  (1319)
1 site		 C C R Y G G G G Y R C C
Sticky ends from different BtgI sites may not be compatible.
NcoI  (1319)
1 site		 C C A T G G G G T A C C
StyI  (1319)
1 site		 C C W W G G G G W W C C
Sticky ends from different StyI sites may not be compatible.
EagI  (1325)
1 site		 C G G C C G G C C G G C
NotI  (1325)
1 site		 G C G G C C G C C G C C G G C G
PaeR7I  (1331)
1 site		 C T C G A G G A G C T C
PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (1331)
1 site		 V C T C G A G B B G A G C T C V
XhoI  (1331)
1 site		 C T C G A G G A G C T C
BfuAI  (1349)
1 site		 A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4
Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (1349)
1 site		 A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4
Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
SphI  (1554)
1 site		 G C A T G C C G T A C G
Eco53kI  (1684)
1 site		 G A G C T C C T C G A G
SacI  (1686)
1 site		 G A G C T C C T C G A G
NgoMIV  (2007)
1 site		 G C C G G C C G G C C G
Efficient cleavage requires at least two copies of the NgoMIV recognition sequence.
NaeI  (2009)
1 site		 G C C G G C C G G C C G
Efficient cleavage requires at least two copies of the NaeI recognition sequence.
DraIII  (2115)
1 site		 C A C N N N G T G G T G N N N C A C
Sticky ends from different DraIII sites may not be compatible.
BssHII  (2444)
1 site		 G C G C G C C G C G C G
BssHII is typically used at 50°C, but is 75% active at 37°C.
NsiI  (2481)
1 site		 A T G C A T T A C G T A
AleI  (2697)
1 site		 C A C N N N N G T G G T G N N N N C A C
NheI  (2748)
1 site		 G C T A G C C G A T C G
BmtI  (2752)
1 site		 G C T A G C C G A T C G
BsiWI  (2840)
1 site		 C G T A C G G C A T G C
BsiWI is typically used at 55°C, but is 50% active at 37°C.
BstXI  (2871)
1 site		 C C A N N N N N N T G G G G T N N N N N N A C C
Sticky ends from different BstXI sites may not be compatible.
MscI  (3049)
1 site		 T G G C C A A C C G G T
BsaBI  (3199)
1 site		 G A T N N N N A T C C T A N N N N T A G
* Blocked by Dam methylation.
AmpR
4474 .. 5334  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   4474 .. 4542  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4474 .. 5334  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   4543 .. 5334  =  792 bp
   263 amino acids  =  29.0 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4474 .. 5334  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
GAL1,10 promoter
8 .. 672  =  665 bp
divergent inducible promoter, regulated by Gal4
GAL1,10 promoter
8 .. 672  =  665 bp
divergent inducible promoter, regulated by Gal4
HIS3
2598 .. 3257  =  660 bp
219 amino acids  =  23.8 kDa
Product: imidazoleglycerol-phosphate dehydratase, required for histidine biosynthesis
yeast auxotrophic marker
HIS3
2598 .. 3257  =  660 bp
219 amino acids  =  23.8 kDa
Product: imidazoleglycerol-phosphate dehydratase, required for histidine biosynthesis
yeast auxotrophic marker
LexA
692 .. 1297  =  606 bp
202 amino acids  =  22.4 kDa
2 segments
   Segment 1:  DNA-binding domain  
   692 .. 943  =  252 bp
   84 amino acids  =  9.2 kDa
Product: E. coli DNA-binding protein that represses genes involved in the SOS response to DNA damage
The N-terminal DNA-binding domain recognizes the 16-bp palindromic sequence 5'-CTGTATATATATACAG-3'.
LexA
692 .. 1297  =  606 bp
202 amino acids  =  22.4 kDa
2 segments
   Segment 2:  
   944 .. 1297  =  354 bp
   118 amino acids  =  13.2 kDa
Product: E. coli DNA-binding protein that represses genes involved in the SOS response to DNA damage
The N-terminal DNA-binding domain recognizes the 16-bp palindromic sequence 5'-CTGTATATATATACAG-3'.
LexA
692 .. 1297  =  606 bp
202 amino acids  =  22.4 kDa
2 segments
Product: E. coli DNA-binding protein that represses genes involved in the SOS response to DNA damage
The N-terminal DNA-binding domain recognizes the 16-bp palindromic sequence 5'-CTGTATATATATACAG-3'.
ori
5505 .. 6093  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
5505 .. 6093  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
CEN/ARS
3829 .. 4332  =  504 bp
S. cerevisiae CEN6 centromere fused to an autonomously replicating sequence
CEN/ARS
3829 .. 4332  =  504 bp
S. cerevisiae CEN6 centromere fused to an autonomously replicating sequence
f1 ori
1882 .. 2337  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
1882 .. 2337  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
ADH1 terminator
1363 .. 1550  =  188 bp
transcription terminator for alcohol dehydrogenase 1
ADH1 terminator
1363 .. 1550  =  188 bp
transcription terminator for alcohol dehydrogenase 1
HIS3 promoter
3258 .. 3445  =  188 bp
HIS3 promoter
3258 .. 3445  =  188 bp
AmpR promoter
4369 .. 4473  =  105 bp
AmpR promoter
4369 .. 4473  =  105 bp
MCS
1298 .. 1336  =  39 bp
multiple cloning site
MCS
1298 .. 1336  =  39 bp
multiple cloning site
M13 fwd
1721 .. 1737  =  17 bp
common sequencing primer, one of multiple similar variants
M13 fwd
1721 .. 1737  =  17 bp
common sequencing primer, one of multiple similar variants
UAS
224 .. 341  =  118 bp
upstream activating sequence mediating Gal4-dependent induction
UAS
224 .. 341  =  118 bp
upstream activating sequence mediating Gal4-dependent induction
ORF:  4474 .. 5334  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  692 .. 1384  =  693 bp
ORF:  230 amino acids  =  25.6 kDa
ORF:  2598 .. 3257  =  660 bp
ORF:  219 amino acids  =  23.8 kDa
ORF:  4938 .. 5204  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  2378 .. 2641  =  264 bp
ORF:  87 amino acids  =  10.4 kDa
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Individual Sequences & Maps

bleMX6
pFA6a-kanMX6
pPIC6(alpha) B
pYES2.1-E
hphMX6
pFA6a-kanMX6-PGAL1
pPIC6(alpha) C
pYES2 CT
kanMX
pFA6a-kanMX6-PGAL1-3HA
pPIC9
pYES2 NT A
kanMX2
pFA6a-kanMX6-PGAL1-GFP
pPIC9K
pYES2 NT B
kanMX4
pFA6a-kanMX6-PGAL1-GST
pPICZ A
pYES2 NT C
kanMX6
pFA6a-natMX6
pPICZ B
pYES3 CT
natMX6
pFA6a-TRP1
pPICZ C
pYES6 CT
pAbAi
pFA6a-TRP1-PGAL1
pPICZ(alpha) A
pYM25
pAD-GAL4
pFA6a-TRP1-PGAL1-3HA
pPICZ(alpha) B
pYM26
pAG25
pFA6a-TRP1-PGAL1-GFP
pPICZ(alpha) C
pYM44
pAG29
pFA6a-TRP1-PGAL1-GST
pPink-HC
YCp50
pAG32
pFLD
pPink-LC
YCp50-poly
pAO815
pFLD(alpha)
pPINK(alpha)-HC
YCplac111
patMX4
pGAD-C1
pRS303
YCplac22
pAUR101
pGAD-C2
pRS304
YCplac33
pAUR112
pGAD-C3
pRS305
YEp13
pAUR123
pGADT7 AD
pRS306
YEp24
pAUR224
pGADT7-Rec
pRS313
YEp351
pBridge
pGADT7-Rec (linearized)
pRS314
YEp352
pDH25
pGAPZ A
pRS315
YEp353
pEG202
pGAPZ B
pRS316
YEp354
pESC-HIS
pGAPZ C
pRS403
YEp355
pESC-LEU
pGAPZ(alpha) A
pRS404
YEp356
pESC-TRP
pGAPZ(alpha) B
pRS405
YEp356R
pESC-URA
pGAPZ(alpha) C
pRS406
YEp357
pFA6-kanMX4
pGBD-C1
pRS413
YEp357R
pFA6a
pGBD-C2
pRS414
YEp358
pFA6a-12Pk-kanMX6
pGBD-C3
pRS415
YEp358R
pFA6a-13Myc-His3MX6
pGBDU-C1
pRS416
YEp363
pFA6a-13Myc-kanMX6
pGBDU-C2
pRS423
YEp364
pFA6a-13Myc-TRP1
pGBDU-C3
pRS424
YEp365
pFA6a-3HA-His3MX6
pGBKT7
pRS425
YEp366
pFA6a-3HA-kanMX6
pGilda
pRS426
YEp366R
pFA6a-3HA-TRP1
pHIL-D2
pSpot5
YEp367
pFA6a-5FLAG-kanMX6
pHIL-S1
pSpot6
YEp367R
pFA6a-bleMX6
pJG4-5
pSpot7
YEp368
pFA6a-GFP(S65T)-His3MX6
pKLAC1
pSpot8
YEp368R
pFA6a-GFP(S65T)-kanMX6
pKLAC2
pTEF1 Zeo
YEplac112
pFA6a-GFP(S65T)-TRP1
pOAD
pUCATPH
YEplac181
pFA6a-GST-His3MX6
pOBD2
pY-secSUMOstar
YEplac195
pFA6a-GST-kanMX6
pP-secSUMO3
pY-SUMOstar
YIp351
pFA6a-GST-TRP1
pPIC3
pYC2-E
YIp352
pFA6a-His3MX6
pPIC3.5
pYC2 CT
YIp5
pFA6a-His3MX6-PGAL1
pPIC3.5K
pYC2 NT A
YIplac128
pFA6a-His3MX6-PGAL1-3HA
pPIC6 A
pYC2 NT B
YIplac204
pFA6a-His3MX6-PGAL1-GFP
pPIC6 B
pYC2 NT C
YIplac211
pFA6a-His3MX6-PGAL1-GST
pPIC6 C
pYC6 CT
YRp7
pFA6a-hphMX6
pPIC6(alpha) A
pYES2
alpha-factor secretion signal

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