pCAMBIA0380

Agrobacterium binary vector for plant transformation, with a kanamycin-resistance gene. The MCS is reversed in pCAMBIA0390.

Sequence Author: Cambia

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HomePlasmidsPlant VectorspCAMBIA0380
SpeI (6801) BglII (6794) NcoI (6787) HindIII (6768) PstI (6764) SalI (6754) BamHI (6748) SmaI (6745) TspMI - XmaI (6743) EcoRI (6738) AscI (6731) ApaI - BanII (6728) PspOMI (6724) BstXI (6721) AvrII (6708) XmnI (6703) AseI (6702) BclI * (6373) SacII (6370) PsiI (6242) Bpu10I (6097) EcoO109I - PpuMI (5958) BspHI (5916) BpmI (5915) BlpI (5766) EcoRV (5493) SspI (5420) BssSI - BssSαI (4829) BstZ17I (4429) PluTI (4234) SfoI (4232) NarI (4231) KasI (4230) MreI - SgrAI (4227) AgeI (3939) BsaI (3848) EcoNI (3758) FspI (3662) BspDI * - ClaI * (3525) HpaI (6809) 6xHis DraIII - PmlI (23) BstEII (36) PvuI (60) AflII (87) MauBI (282) RB T-DNA repeat SphI (441) ScaI (472) PasI (1775) AclI (2369) BsiWI (3329) pCAMBIA0380 6813 bp
SpeI  (6801)
1 site		 A C T A G T T G A T C A
BglII  (6794)
1 site		 A G A T C T T C T A G A
NcoI  (6787)
1 site		 C C A T G G G G T A C C
HindIII  (6768)
1 site		 A A G C T T T T C G A A
PstI  (6764)
1 site		 C T G C A G G A C G T C
SalI  (6754)
1 site		 G T C G A C C A G C T G
BamHI  (6748)
1 site		 G G A T C C C C T A G G
After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
SmaI  (6745)
1 site		 C C C G G G G G G C C C
SmaI can be used at 37°C for brief incubations.
TspMI  (6743)
1 site		 C C C G G G G G G C C C
XmaI  (6743)
1 site		 C C C G G G G G G C C C
Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
EcoRI  (6738)
1 site		 G A A T T C C T T A A G
AscI  (6731)
1 site		 G G C G C G C C C C G C G C G G
ApaI  (6728)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
BanII  (6728)
1 site		 G R G C Y C C Y C G R G
Sticky ends from different BanII sites may not be compatible.
PspOMI  (6724)
1 site		 G G G C C C C C C G G G
BstXI  (6721)
1 site		 C C A N N N N N N T G G G G T N N N N N N A C C
Sticky ends from different BstXI sites may not be compatible.
AvrII  (6708)
1 site		 C C T A G G G G A T C C
XmnI  (6703)
1 site		 G A A N N N N T T C C T T N N N N A A G
AseI  (6702)
1 site		 A T T A A T T A A T T A
BclI  (6373)
1 site		 T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
SacII  (6370)
1 site		 C C G C G G G G C G C C
Efficient cleavage requires at least two copies of the SacII recognition sequence.
PsiI  (6242)
1 site		 T T A T A A A A T A T T
Bpu10I  (6097)
1 site		 C C T N A G C G G A N T C G
Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
EcoO109I  (5958)
1 site		 R G G N C C Y Y C C N G G R
Sticky ends from different EcoO109I sites may not be compatible.
PpuMI  (5958)
1 site		 R G G W C C Y Y C C W G G R
Sticky ends from different PpuMI sites may not be compatible.
BspHI  (5916)
1 site		 T C A T G A A G T A C T
BpmI  (5915)
1 site		 C T G G A G ( N ) 14 N N G A C C T C ( N ) 14
Efficient cleavage requires at least two copies of the BpmI recognition sequence.
Sticky ends from different BpmI sites may not be compatible.
After cleavage, BpmI can remain bound to DNA and alter its electrophoretic mobility.
BpmI quickly loses activity at 37°C.
BlpI  (5766)
1 site		 G C T N A G C C G A N T C G
Sticky ends from different BlpI sites may not be compatible.
EcoRV  (5493)
1 site		 G A T A T C C T A T A G
EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
SspI  (5420)
1 site		 A A T A T T T T A T A A
BssSI  (4829)
1 site		 C A C G A G G T G C T C
BssSαI  (4829)
1 site		 C A C G A G G T G C T C
BstZ17I  (4429)
1 site		 G T A T A C C A T A T G
PluTI  (4234)
1 site		 G G C G C C C C G C G G
Efficient cleavage requires at least two copies of the PluTI recognition sequence.
SfoI  (4232)
1 site		 G G C G C C C C G C G G
NarI  (4231)
1 site		 G G C G C C C C G C G G
Efficient cleavage requires at least two copies of the NarI recognition sequence.
KasI  (4230)
1 site		 G G C G C C C C G C G G
MreI  (4227)
1 site		 C G C C G G C G G C G G C C G C
SgrAI  (4227)
1 site		 C R C C G G Y G G Y G G C C R C
Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
AgeI  (3939)
1 site		 A C C G G T T G G C C A
BsaI  (3848)
1 site		 G G T C T C N C C A G A G N ( N ) 4
Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
EcoNI  (3758)
1 site		 C C T N N N N N A G G G G A N N N N N T C C
The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
FspI  (3662)
1 site		 T G C G C A A C G C G T
BspDI  (3525)
1 site		 A T C G A T T A G C T A
* Blocked by Dam methylation.
ClaI  (3525)
1 site		 A T C G A T T A G C T A
* Blocked by Dam methylation.
HpaI  (6809)
1 site		 G T T A A C C A A T T G
DraIII  (23)
1 site		 C A C N N N G T G G T G N N N C A C
Sticky ends from different DraIII sites may not be compatible.
PmlI  (23)
1 site		 C A C G T G G T G C A C
BstEII  (36)
1 site		 G G T N A C C C C A N T G G
Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
PvuI  (60)
1 site		 C G A T C G G C T A G C
AflII  (87)
1 site		 C T T A A G G A A T T C
MauBI  (282)
1 site		 C G C G C G C G G C G C G C G C
SphI  (441)
1 site		 G C A T G C C G T A C G
ScaI  (472)
1 site		 A G T A C T T C A T G A
PasI  (1775)
1 site		 C C C W G G G G G G W C C C
Sticky ends from different PasI sites may not be compatible.
AclI  (2369)
1 site		 A A C G T T T T G C A A
BsiWI  (3329)
1 site		 C G T A C G G C A T G C
BsiWI is typically used at 55°C, but is 50% active at 37°C.
pVS1 RepA
2714 .. 3787  =  1074 bp
357 amino acids  =  39.9 kDa
Product: replication protein from Pseudomonas plasmid pVS1
pVS1 RepA
2714 .. 3787  =  1074 bp
357 amino acids  =  39.9 kDa
Product: replication protein from Pseudomonas plasmid pVS1
KanR
5392 .. 6186  =  795 bp
264 amino acids  =  31.0 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin
KanR
5392 .. 6186  =  795 bp
264 amino acids  =  31.0 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin
pVS1 StaA
1656 .. 2285  =  630 bp
209 amino acids  =  22.1 kDa
Product: stability protein from Pseudomonas plasmid pVS1
pVS1 StaA
1656 .. 2285  =  630 bp
209 amino acids  =  22.1 kDa
Product: stability protein from Pseudomonas plasmid pVS1
ori
4717 .. 5305  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
4717 .. 5305  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
NOS terminator
58 .. 310  =  253 bp
nopaline synthase terminator and poly(A) signal
NOS terminator
58 .. 310  =  253 bp
nopaline synthase terminator and poly(A) signal
pVS1 oriV
3853 .. 4047  =  195 bp
origin of replication for the Pseudomonas plasmid pVS1 (Heeb et al., 2000)
pVS1 oriV
3853 .. 4047  =  195 bp
origin of replication for the Pseudomonas plasmid pVS1 (Heeb et al., 2000)
bom
4391 .. 4531  =  141 bp
basis of mobility region from pBR322
bom
4391 .. 4531  =  141 bp
basis of mobility region from pBR322
MCS
6738 .. 6773  =  36 bp
multiple cloning site from pUC8
MCS
6738 .. 6773  =  36 bp
multiple cloning site from pUC8
RB T-DNA repeat
332 .. 356  =  25 bp
right border repeat from nopaline C58 T-DNA
RB T-DNA repeat
332 .. 356  =  25 bp
right border repeat from nopaline C58 T-DNA
LB T-DNA repeat
6611 .. 6635  =  25 bp
left border repeat from nopaline C58 T-DNA
LB T-DNA repeat
6611 .. 6635  =  25 bp
left border repeat from nopaline C58 T-DNA
6xHis
6 .. 23  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
6 .. 23  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
ORF:  671 .. 1357  =  687 bp
ORF:  228 amino acids  =  25.1 kDa
ORF:  2612 .. 3787  =  1176 bp
ORF:  391 amino acids  =  43.9 kDa
ORF:  5525 .. 5755  =  231 bp
ORF:  76 amino acids  =  8.3 kDa
ORF:  1656 .. 2285  =  630 bp
ORF:  209 amino acids  =  22.1 kDa
ORF:  703 .. 1053  =  351 bp
ORF:  116 amino acids  =  12.6 kDa
ORF:  2560 .. 2817  =  258 bp
ORF:  85 amino acids  =  9.6 kDa
ORF:  5392 .. 6186  =  795 bp
ORF:  264 amino acids  =  31.0 kDa
ORF:  6702 .. 128  =  240 bp
ORF:  79 amino acids  =  8.8 kDa
ORF:  1122 .. 1394  =  273 bp
ORF:  90 amino acids  =  9.9 kDa
ORF:  1394 .. 1708  =  315 bp
ORF:  104 amino acids  =  12.0 kDa
ORF:  2582 .. 3154  =  573 bp
ORF:  190 amino acids  =  20.6 kDa
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Individual Sequences & Maps

pBI121
pCAMBIA1381Xa
pEarleyGate 201
pPZP100
pBI221
pCAMBIA1381Xb
pEarleyGate 202
pPZP101
pBin19
pCAMBIA1381Xc
pEarleyGate 203
pPZP102
pBINPLUS
pCAMBIA1381Z
pEarleyGate 204
pPZP111
pCAMBIA0105.1R
pCAMBIA1390
pEarleyGate 205
pPZP112
pCAMBIA0305.1
pCAMBIA1391
pEarleyGate 301
pPZP121
pCAMBIA0305.2
pCAMBIA1391Xa
pEarleyGate 302
pPZP122
pCAMBIA0380
pCAMBIA1391Xb
pEarleyGate 303
pPZP200
pCAMBIA0390
pCAMBIA1391Xc
pEarleyGate 304
pPZP201
pCAMBIA1105.1
pCAMBIA1391Z
pFGC5941
pPZP202
pCAMBIA1105.1R
pCAMBIA2200
pGA643
pPZP211
pCAMBIA1200
pCAMBIA2201
pGreen
pPZP212
pCAMBIA1201
pCAMBIA2300
pGreen 0029
pPZP221
pCAMBIA1281Z
pCAMBIA2301
pGreenII
pPZP222
pCAMBIA1291Z
pCAMBIA3200
pGreenII 0049
pRI 101-AN
pCAMBIA1300
pCAMBIA3201
pGreenII 0179
pRI 101-ON
pCAMBIA1301
pCAMBIA3300
pGreenII 0229
pRI 201-AN
pCAMBIA1302
pCAMBIA3301
pGreenII 0579
pRI 201-ON
pCAMBIA1303
pCAMBIA5105
pHANNIBAL
pRI 909
pCAMBIA1304
pEarleyGate 100
pHELLSGATE
pRI 910
pCAMBIA1305.1
pEarleyGate 101
pHELLSGATE 12
pSB1
pCAMBIA1305.2
pEarleyGate 102
pHELLSGATE 4
pSB11
pCAMBIA1380
pEarleyGate 103
pHELLSGATE 8
pSoup
pCAMBIA1381
pEarleyGate 104
pKANNIBAL

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