pCMV-GLuc 2

Control vector with a strong constitutive CMV promoter for expressing secreted Gaussia luciferase in mammalian cells.

Sequence Author: New England Biolabs

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SgrDI (5800) SspI (5683) ScaI (5359) PciI (3986) BstZ17I (3607) BsmI (3555) PfoI (3410) BstBI (3317) RsrII (3151) BssHII (3032) BglII (12) MfeI (161) Bpu10I (180) MluI (228) SpeI (249) CMV enhancer NdeI (484) SnaBI (590) HindIII (889) Acc65I (895) KpnI (899) BamHI (907) BbsI (996) SacII (1051) NotI (1479) XbaI (1535) DraIII (1901) CsiI - SexAI * (2192) BseRI (2421) StuI (2424) AvrII (2425) AvaI - BsoBI - TspMI - XmaI (2446) SmaI (2448) BclI * (2476) KasI (2634) NarI (2635) SfoI (2636) PluTI (2638) PstI (2688) PflFI - Tth111I (2753) pCMV-GLuc 2 5802 bp
SgrDI  (5800)
1 site
C G T C G A C G G C A G C T G C
SspI  (5683)
1 site
A A T A T T T T A T A A
ScaI  (5359)
1 site
A G T A C T T C A T G A
PciI  (3986)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
BstZ17I  (3607)
1 site
G T A T A C C A T A T G
BsmI  (3555)
1 site
G A A T G C N C T T A C G N

Sticky ends from different BsmI sites may not be compatible.
PfoI  (3410)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
BstBI  (3317)
1 site
T T C G A A A A G C T T
RsrII  (3151)
1 site
C G G W C C G G C C W G G C

Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
BssHII  (3032)
1 site
G C G C G C C G C G C G

BssHII is typically used at 50°C, but is 75% active at 37°C.
BglII  (12)
1 site
A G A T C T T C T A G A
MfeI  (161)
1 site
C A A T T G G T T A A C
Bpu10I  (180)
1 site
C C T N A G C G G A N T C G

Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
MluI  (228)
1 site
A C G C G T T G C G C A
SpeI  (249)
1 site
A C T A G T T G A T C A
NdeI  (484)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
SnaBI  (590)
1 site
T A C G T A A T G C A T
HindIII  (889)
1 site
A A G C T T T T C G A A
Acc65I  (895)
1 site
G G T A C C C C A T G G
KpnI  (899)
1 site
G G T A C C C C A T G G
BamHI  (907)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
BbsI  (996)
1 site
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
SacII  (1051)
1 site
C C G C G G G G C G C C

Efficient cleavage requires at least two copies of the SacII recognition sequence.
NotI  (1479)
1 site
G C G G C C G C C G C C G G C G
XbaI  (1535)
1 site
T C T A G A A G A T C T
DraIII  (1901)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
CsiI  (2192)
1 site
A C C W G G T T G G W C C A

Sticky ends from different CsiI sites may not be compatible.
SexAI  (2192)
1 site
A C C W G G T T G G W C C A
* Blocked by Dcm methylation.
Sticky ends from different SexAI sites may not be compatible.
BseRI  (2421)
1 site
G A G G A G ( N ) 8 N N C T C C T C ( N ) 8

Sticky ends from different BseRI sites may not be compatible.
BseRI quickly loses activity at 37°C.
Prolonged incubation with BseRI may lead to degradation of the DNA.
StuI  (2424)
1 site
A G G C C T T C C G G A
AvrII  (2425)
1 site
C C T A G G G G A T C C
AvaI  (2446)
1 site
C Y C G R G G R G C Y C

Sticky ends from different AvaI sites may not be compatible.
BsoBI  (2446)
1 site
C Y C G R G G R G C Y C

Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
TspMI  (2446)
1 site
C C C G G G G G G C C C
XmaI  (2446)
1 site
C C C G G G G G G C C C

Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (2448)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
BclI  (2476)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
KasI  (2634)
1 site
G G C G C C C C G C G G
NarI  (2635)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
SfoI  (2636)
1 site
G G C G C C C C G C G G
PluTI  (2638)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
PstI  (2688)
1 site
C T G C A G G A C G T C
PflFI  (2753)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2753)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
AmpR
4806 .. 5666  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   4806 .. 5597  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4806 .. 5666  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   5598 .. 5666  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4806 .. 5666  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
NeoR/KanR
2507 .. 3301  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin®)
NeoR/KanR
2507 .. 3301  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin®)
ori
4047 .. 4635  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
4047 .. 4635  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
hGLuc
920 .. 1477  =  558 bp
185 amino acids  =  19.9 kDa
Product: secreted Gaussia luciferase
human codon-optimized
hGLuc
920 .. 1477  =  558 bp
185 amino acids  =  19.9 kDa
Product: secreted Gaussia luciferase
human codon-optimized
f1 ori
1668 .. 2096  =  429 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
1668 .. 2096  =  429 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
CMV enhancer
235 .. 614  =  380 bp
human cytomegalovirus immediate early enhancer
CMV enhancer
235 .. 614  =  380 bp
human cytomegalovirus immediate early enhancer
SV40 promoter
2110 .. 2440  =  331 bp
SV40 enhancer and early promoter
SV40 promoter
2110 .. 2440  =  331 bp
SV40 enhancer and early promoter
CMV promoter
615 .. 818  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
CMV promoter
615 .. 818  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
SV40 poly(A) signal
3475 .. 3596  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
3475 .. 3596  =  122 bp
SV40 polyadenylation signal
AmpR promoter
5667 .. 5771  =  105 bp
AmpR promoter
5667 .. 5771  =  105 bp
poly(A) signal
1486 .. 1534  =  49 bp
synthetic polyadenylation signal
poly(A) signal
1486 .. 1534  =  49 bp
synthetic polyadenylation signal
T7 promoter
863 .. 881  =  19 bp
promoter for bacteriophage T7 RNA polymerase
T7 promoter
863 .. 881  =  19 bp
promoter for bacteriophage T7 RNA polymerase
SV40 ori
2291 .. 2426  =  136 bp
SV40 origin of replication
SV40 ori
2291 .. 2426  =  136 bp
SV40 origin of replication
Kozak sequence
914 .. 923  =  10 bp
Kozak sequence
914 .. 923  =  10 bp
ORF:  4936 .. 5202  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  920 .. 1477  =  558 bp
ORF:  185 amino acids  =  19.9 kDa
ORF:  1619 .. 1885  =  267 bp
ORF:  88 amino acids  =  9.3 kDa
ORF:  2507 .. 3301  =  795 bp
ORF:  264 amino acids  =  29.0 kDa
ORF:  2679 .. 3065  =  387 bp
ORF:  128 amino acids  =  14.6 kDa
ORF:  862 .. 1188  =  327 bp
ORF:  108 amino acids  =  11.6 kDa
ORF:  4806 .. 5666  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  875 .. 1597  =  723 bp
ORF:  240 amino acids  =  26.1 kDa
ORF:  2816 .. 3352  =  537 bp
ORF:  178 amino acids  =  19.8 kDa
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